PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0038s0820.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 244aa MW: 27773.1 Da PI: 9.657 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.3 | 8.4e-06 | 132 | 171 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rR +++ +++ L++l+ + +K + a++L++A YIk Lq SapurV1A.0038s0820.1.p 132 RRSHKLSDKITALQKLVSPY-----GKTDTASVLQEASLYIKLLQ 171 8999**************99.....9****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.48 | 121 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.75E-5 | 124 | 175 | No hit | No description |
SuperFamily | SSF47459 | 1.96E-9 | 132 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.6E-8 | 132 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MDGKINVHGN SFYLGSRVFN DDHQQRDAGF SIPNQYLANY QPGYQSISST GNDISQQSTL 60 LSKRASVPEV QMDFQAMQMK TRTVNDHIEN KADLSTWKTN KRKKANSPED PWNHRAIESI 120 DIQERKFQVP VRRSHKLSDK ITALQKLVSP YGKTDTASVL QEASLYIKLL QEQIQNLFQM 180 LTGSYNSARP VRQSQEIDGR LFDLRSGGFC LVPVSFMQEM TQQQDHADPN SDPRKTIRAR 240 TSY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0038s0820.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT029523 | 8e-74 | CT029523.1 Poplar cDNA sequences. | |||
GenBank | CT029524 | 8e-74 | CT029524.1 Poplar cDNA sequences. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002311153.3 | 1e-137 | transcription factor bHLH110 isoform X1 | ||||
TrEMBL | A0A3N7FHR3 | 1e-138 | A0A3N7FHR3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s05200.1 | 1e-102 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13355 | 15 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31730.1 | 1e-21 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0038s0820.1.p |