PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0037s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family AP2
Protein Properties Length: 430aa    MW: 47226.8 Da    PI: 8.8733
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0037s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.56.6e-1373129155
                     AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                             s y+GV++++++gr++A+++d  ++n  ++k+   g ++ +e Aa+a++ a++k++g
  SapurV1A.0037s0030.1.p  73 SIYRGVTRHRWTGRYEAHLWDkSTWNHnQNKKGKQGAYDDEEAAARAYDLAALKYWG 129
                             57*******************6666555664444499******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-873129IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-1473138IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.6E-1274138IPR001471AP2/ERF domain
PROSITE profilePS5103218.51874137IPR001471AP2/ERF domain
SMARTSM003803.9E-1974143IPR001471AP2/ERF domain
PRINTSPR003674.3E-57586IPR001471AP2/ERF domain
PRINTSPR003674.3E-5119139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MASSSSDPVL KPEVGGVGCG GGSGGGESSE AAVIANDQLL LCRGLKKPKK ERGCTAKERI  60
SKMPPCTAGK RSSIYRGVTR HRWTGRYEAH LWDKSTWNHN QNKKGKQGAY DDEEAAARAY  120
DLAALKYWGP GTLINFPVTD YKRDLEEMQN VSREEYLASL WRKSSGFSRG LSKYRALSSR  180
WDSSCSRMPG SEYCSSVNYG AGDDRAAESG YGGSFCSERK IDLTGYIKWW ISHSTRQVES  240
ITKSSEDTKH GCPDDIGSEL KTSEREVKCT QPYQMPHLGL SVEGKRQKSS TISALSILSQ  300
SAAYKSLQEK ASKKQETSTE NDENENKNTV NKMDRGKAVE KSTCHDGSSE RLGGATLGMT  360
GGLSLQRNVY PLTPFLSAPL LTNYNTMDPL VYPILWTSLV PALPTGLSRN PEVKKTETSS  420
THSFFRPEE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0037s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2175870.0AC217587.1 Populus trichocarpa clone POP031-F05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443950.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
SwissprotQ8GWK21e-162AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A3N7G2H40.0A0A3N7G2H4_POPTR; Uncharacterized protein
STRINGPOPTR_0016s05670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60072936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-152AP2 family protein