PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0034s0060.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

C2H2

Protein Properties

Length: 298aa MW: 32093.5 Da PI: 9.8294

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0034s0060.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	108	130	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H SapurV1A.0034s0060.1.p 108 FSCSFCKREFSTSQALGGHQNAH 130 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.56E-6	105	135	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.8E-4	106	134	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.552	108	135	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	110	130	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MESSGTEKSP SEGSSISATS EGAPRRDGGD LDRTKMAPRM KEKVVGGSEP ALLSEASARV 60 LLDLKLSGDS SIRGSKLEFN LFSPMSVGSS HAKESIDETS RQAESRVFSC SFCKREFSTS 120 QALGGHQNAH KQERALAKRR REMGASAIGQ YLPYYYPYSS SLSANPNYGS LNRSLGVRMD 180 SFIHKTSPYS WTSPAGGHRY GGHSGWLRQT LMNTQPSIDR LRAQSLSSFC GGFGTSTTSS 240 SPRFDGNGLV RNNFGASPSS NNVVAIRKPP VTDHIQQNNP PKNDQTDESG LDLSLKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0034s0060.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006389432.1	1e-175	uncharacterized protein LOC18111080
TrEMBL	U7E2Y1	1e-174	U7E2Y1_POPTR; Zinc finger family protein
STRING	POPTR_0025s00650.1	1e-174	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1822	30	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01860.1	8e-20	C2H2 family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0034s0060.1.p