PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0033s0490.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | GRAS | ||||||||
Protein Properties | Length: 570aa MW: 63568.2 Da PI: 5.549 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 315.4 | 1.2e-96 | 214 | 567 | 4 | 373 |
GRAS 4 lLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 + ++Ae +++g+ laq +Larl+++ + p g+p qR+a+yf+eAL+ l+ + ++ n + ++ a+k fse+sP SapurV1A.0033s0490.5.p 214 PICQAAELIETGNPVLAQGILARLNHQlSVPIGKPYQRAAFYFKEALQLLLNM------NNNNSIGI-ACNLIFKIGAYKSFSEISP 293 5789*********************9989999******************998......22222222.35699************** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176 il+f ++t+Nqa+lea+eg er+H++Dfdi++G+QW++L+q+La R++g+psl+iT+++sp+s+++ el t+e+L+ fA+e+++pf SapurV1A.0033s0490.5.p 294 ILQFENFTCNQALLEAFEGFERIHVVDFDIGYGGQWASLMQELALRNGGAPSLKITAFASPSSQDELELGFTQENLKIFASEVNMPF 380 *************************************************************************************** PP GRAS 177 efnvlvakrledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262 e ++l ++l++ + +Lrv ++E++aVnl + ++ + +s+ + vL++vk+lsPkvvv ++ + +++ +F++++ +a++ SapurV1A.0033s0490.5.p 381 ELEILSLESLSSGsWPMHLRVTEKEVIAVNLPVGSFSNY------PSTLPLVLRFVKQLSPKVVVSLDRGCYRSDLPFAHHVNHAIQ 461 ****97777776625788***************888877......445567************************************ PP GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349 y++l++sl+a + ++ +k+Er+l+++ i++ v ++ + + Wr+ + ++GF+p+++s+++++qa++l+++++++g+ SapurV1A.0033s0490.5.p 462 SYTSLLESLDAV-NVNLDALQKIERFLVRPGIEKSVLGRHCS----LYMTAPWRSLFLQSGFTPLTFSNFTESQAEYLVQRTPVRGF 543 *********665.3566999*****************99998....77789************************************ PP GRAS 350 rveeesgslvlgWkdrpLvsvSaW 373 +ve+++ slvl+W+++ Lvs+SaW SapurV1A.0033s0490.5.p 544 HVEKRQSSLVLCWQQKDLVSASAW 567 ************************ PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 42.834 | 185 | 548 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.2E-94 | 214 | 567 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
MEDWESGLDG SPSQEQSILR LIMGDVEDPF LGLNKLLQSG SRSQDMELSA SGFGVVDQVF 60 GFEVPNMSTA SASLLVNHNS TDPSSIHGLF QQHQQHVAFD QDEKPRILNP GAIINQNQHQ 120 FVQNPAMLYA QLEEHHNNLH FLSPPPLKRL DTGPAGANHV PKVFDLRLPE SFPPRQQQQF 180 QLMQQQRQGM IAKQEVAGDE LETQQQLQQA IINPICQAAE LIETGNPVLA QGILARLNHQ 240 LSVPIGKPYQ RAAFYFKEAL QLLLNMNNNN SIGIACNLIF KIGAYKSFSE ISPILQFENF 300 TCNQALLEAF EGFERIHVVD FDIGYGGQWA SLMQELALRN GGAPSLKITA FASPSSQDEL 360 ELGFTQENLK IFASEVNMPF ELEILSLESL SSGSWPMHLR VTEKEVIAVN LPVGSFSNYP 420 STLPLVLRFV KQLSPKVVVS LDRGCYRSDL PFAHHVNHAI QSYTSLLESL DAVNVNLDAL 480 QKIERFLVRP GIEKSVLGRH CSLYMTAPWR SLFLQSGFTP LTFSNFTESQ AEYLVQRTPV 540 RGFHVEKRQS SLVLCWQQKD LVSASAWGC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-31 | 217 | 567 | 25 | 378 | Protein SCARECROW |
5b3h_A | 4e-31 | 217 | 567 | 24 | 377 | Protein SCARECROW |
5b3h_D | 4e-31 | 217 | 567 | 24 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0033s0490.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC211804 | 0.0 | AC211804.1 Populus trichocarpa clone POP017-B20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024451816.1 | 0.0 | scarecrow-like protein 6 isoform X2 | ||||
Swissprot | O81316 | 1e-162 | SCL6_ARATH; Scarecrow-like protein 6 | ||||
TrEMBL | A0A2K2BIU3 | 0.0 | A0A2K2BIU3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s14550.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 1e-161 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0033s0490.5.p |
Publications ? help Back to Top | |||
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