PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0033s0490.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 612aa    MW: 68101.4 Da    PI: 5.6891
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0033s0490.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS315.11.5e-962566094373
                    GRAS   4 lLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                              + ++Ae +++g+  laq +Larl+++ + p g+p qR+a+yf+eAL+  l+       +  ++      n + ++ a+k fse+sP
  SapurV1A.0033s0490.1.p 256 PICQAAELIETGNPVLAQGILARLNHQlSVPIGKPYQRAAFYFKEALQLLLNM------NNNNSIGI-ACNLIFKIGAYKSFSEISP 335
                             5789*********************9989999******************998......22222222.35699************** PP

                    GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                             il+f ++t+Nqa+lea+eg er+H++Dfdi++G+QW++L+q+La R++g+psl+iT+++sp+s+++ el  t+e+L+ fA+e+++pf
  SapurV1A.0033s0490.1.p 336 ILQFENFTCNQALLEAFEGFERIHVVDFDIGYGGQWASLMQELALRNGGAPSLKITAFASPSSQDELELGFTQENLKIFASEVNMPF 422
                             *************************************************************************************** PP

                    GRAS 177 efnvlvakrledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                             e ++l  ++l++   + +Lrv ++E++aVnl +  ++ +      +s+ + vL++vk+lsPkvvv  ++ + +++ +F++++ +a++
  SapurV1A.0033s0490.1.p 423 ELEILSLESLSSGsWPMHLRVTEKEVIAVNLPVGSFSNY------PSTLPLVLRFVKQLSPKVVVSLDRGCYRSDLPFAHHVNHAIQ 503
                             ****97777776625788***************888877......445567************************************ PP

                    GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349
                              y++l++sl+a    + ++ +k+Er+l+++ i++ v  ++ +        + Wr+ + ++GF+p+++s+++++qa++l+++++++g+
  SapurV1A.0033s0490.1.p 504 SYTSLLESLDAV-NVNLDALQKIERFLVRPGIEKSVLGRHCS----LYMTAPWRSLFLQSGFTPLTFSNFTESQAEYLVQRTPVRGF 585
                             *********665.3566999*****************99998....77789************************************ PP

                    GRAS 350 rveeesgslvlgWkdrpLvsvSaW 373
                             +ve+++ slvl+W+++ Lvs+SaW
  SapurV1A.0033s0490.1.p 586 HVEKRQSSLVLCWQQKDLVSASAW 609
                             ************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.834227590IPR005202Transcription factor GRAS
PfamPF035145.2E-94256609IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MEDWESGLDG SPSQEQSILR LIMGDVEDPF LGLNKLLQSG SRSQDMELSA SGFGVVDQVF  60
GFEVPNMSTA SASLLVNHNS TDPSSIHGTS PDFPLVNLRA TRSFNNGRVI DQNPTPNPVL  120
FTSGINILPG LFQQHQQHVA FDQDEKPRIL NPGAIINQNQ HQFVQNPAML YAQLEEHHNN  180
LHFLSPPPLK RLDTGPAGAN HVPKVFDLRL PESFPPRQQQ QFQLMQQQRQ GMIAKQEVAG  240
DELETQQQLQ QAIINPICQA AELIETGNPV LAQGILARLN HQLSVPIGKP YQRAAFYFKE  300
ALQLLLNMNN NNSIGIACNL IFKIGAYKSF SEISPILQFE NFTCNQALLE AFEGFERIHV  360
VDFDIGYGGQ WASLMQELAL RNGGAPSLKI TAFASPSSQD ELELGFTQEN LKIFASEVNM  420
PFELEILSLE SLSSGSWPMH LRVTEKEVIA VNLPVGSFSN YPSTLPLVLR FVKQLSPKVV  480
VSLDRGCYRS DLPFAHHVNH AIQSYTSLLE SLDAVNVNLD ALQKIERFLV RPGIEKSVLG  540
RHCSLYMTAP WRSLFLQSGF TPLTFSNFTE SQAEYLVQRT PVRGFHVEKR QSSLVLCWQQ  600
KDLVSASAWG C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-3125960924377Protein SCARECROW
5b3h_D5e-3125960924377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0033s0490.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2118040.0AC211804.1 Populus trichocarpa clone POP017-B20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451815.10.0scarecrow-like protein 6 isoform X1
SwissprotO813161e-148SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A2K2BIU30.0A0A2K2BIU3_POPTR; Uncharacterized protein
STRINGPOPTR_0002s14550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-141GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]