PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0033s0460.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 682aa    MW: 75309.1 Da    PI: 5.5793
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0033s0460.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS309.57.8e-953256775373
                    GRAS   5 LlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                             + ++Ae +++g+  laq +Larl+++ + p  +p qR a+yf+eAL+  l+       +  ++  t+ +n + ++ a+k fse+sPi
  SapurV1A.0033s0460.2.p 325 VCQAAELIETGNPVLAQGILARLNHQlSVPISKPYQRTAFYFKEALQLLLNV------NNNNCIGTA-YNLIFKIGAYKSFSEISPI 404
                             789*********************99677888******************98......566666665.89***************** PP

                    GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                             l+f+++t+Nqa+lea+eg +r+H++Dfdi++G+QW++L+q+LasR++g+psl+iT+++sp+s ++ el  t+e+L+ fA+e+++pfe
  SapurV1A.0033s0460.2.p 405 LQFANFTCNQALLEAFEGFDRIHVVDFDIGYGGQWASLMQELASRNGGAPSLKITAFVSPSSRDELELDFTQENLRIFASEINMPFE 491
                             *************************************************************************************** PP

                    GRAS 178 fnvlvakrledle.leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                              ++l  ++l++ + + +L +  +E++a+nl +  ++ +      +s+ + vL++vk+lsPkvvv  ++ +d+++ +F++++  a++ 
  SapurV1A.0033s0460.2.p 492 LEILSLESLSSGSwPMNLCTLDKEVTAINLPVGSFSNY------PSTLPLVLRFVKQLSPKVVVSLDRGCDRSDLPFAHHINLAIQS 572
                             ***9777776653155566666**********888877......445567************************************* PP

                    GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
                             y++l++sl+a    + +  + +Er+l+++ i+++v  +         +   Wr+ + ++GF+p+++s+++++qa++ll++++++g++
  SapurV1A.0033s0460.2.p 573 YTSLLESLDAV-NVNLDILQRIERFLVQPGIEKMVLGRRGC----FHRTPPWRSLFLQSGFTPLTFSNFTESQAEYLLQRTPVRGFH 654
                             ********665.3455888899*************987665....66789************************************* PP

                    GRAS 351 veeesgslvlgWkdrpLvsvSaW 373
                             ve+++ slvl+W+++ Lvs+SaW
  SapurV1A.0033s0460.2.p 655 VEKKQSSLVLCWQQKDLVSASAW 677
                             *********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.434295658IPR005202Transcription factor GRAS
PfamPF035142.7E-92325677IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MKAMSLPCEG SQGKGLFDFS SSSSSSSTTT SSPDPFHQHH HKWQNNNSKQ SCDFLVGSTE  60
PTSVLETIGR QSPPPPSSTL SSFQGGGAST GTTNGVGAAG GSSLSVDEKC GPQLGMEDWE  120
SVLPGSPSQE QSIIRLIMGD IEDPALGLNK LIQGGSRSQD MELNASGFGV LDQVFGFEVP  180
NMCTASANLF VNSNNIDPSS FHGLFQQHQQ QAAFDQDEKP QILNPGVIIN QNQHQFVQNP  240
AVVLPLSYAQ LEEHHLLNAR PVGANYMPKV FDLRPPELFL PRQQQQSHQF QMMQQQRQGM  300
VTKQKIASDE LENQQQLQQA IINPVCQAAE LIETGNPVLA QGILARLNHQ LSVPISKPYQ  360
RTAFYFKEAL QLLLNVNNNN CIGTAYNLIF KIGAYKSFSE ISPILQFANF TCNQALLEAF  420
EGFDRIHVVD FDIGYGGQWA SLMQELASRN GGAPSLKITA FVSPSSRDEL ELDFTQENLR  480
IFASEINMPF ELEILSLESL SSGSWPMNLC TLDKEVTAIN LPVGSFSNYP STLPLVLRFV  540
KQLSPKVVVS LDRGCDRSDL PFAHHINLAI QSYTSLLESL DAVNVNLDIL QRIERFLVQP  600
GIEKMVLGRR GCFHRTPPWR SLFLQSGFTP LTFSNFTESQ AEYLLQRTPV RGFHVEKKQS  660
SLVLCWQQKD LVSASAWSCY K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-323096785379Protein SCARECROW
5b3h_A8e-323096784378Protein SCARECROW
5b3h_D8e-323096784378Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0033s0460.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451543.10.0scarecrow-like protein 6 isoform X1
TrEMBLA0A2K2BIS90.0A0A2K2BIS9_POPTR; Uncharacterized protein
STRINGPOPTR_0002s14550.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-151GRAS family protein