PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0033s0440.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C2H2 | ||||||||
Protein Properties | Length: 370aa MW: 41657.3 Da PI: 6.4555 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00038 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C ksFs+ L H+r+H SapurV1A.0033s0440.1.p 4 HKCKLCFKSFSNGRALGGHMRSH 26 79********************9 PP | |||||||
2 | zf-C2H2 | 13.2 | 0.00026 | 229 | 251 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+++F++ L H +H SapurV1A.0033s0440.1.p 229 YKCETCNRVFKSYQALGGHRASH 251 9************9999998887 PP | |||||||
3 | zf-C2H2 | 12.7 | 0.00039 | 283 | 305 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++Fs+ L H r+H SapurV1A.0033s0440.1.p 283 HECPYCFRVFSSGQALGGHKRSH 305 79******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.6E-8 | 3 | 26 | No hit | No description |
Pfam | PF13912 | 5.6E-6 | 4 | 26 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.038 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.118 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.6E-8 | 224 | 251 | No hit | No description |
PROSITE profile | PS50157 | 10.305 | 229 | 256 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.5E-11 | 229 | 253 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 229 | 251 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 231 | 251 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.83E-5 | 280 | 306 | No hit | No description |
PROSITE profile | PS50157 | 9.286 | 283 | 305 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.1E-11 | 283 | 306 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.17 | 283 | 305 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 285 | 305 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MEKHKCKLCF KSFSNGRALG GHMRSHLLIL PIPPKLEDRF PNIEVSEDTE STSSSEEEAE 60 EGHEEEEEEK AVFYGPRENP KRSTRLVDPE FSLAAADAGS VVLQDRESES ESSKNPTRRR 120 SKRTKRLLEQ HRQYHQQRPR QEQENNIIIE KLEFKKMRTV KTAAESSWGH EPEPVSSVSG 180 TTTEEDVAFC LVMLSRDRWK RKEGEELAGA ETDDSDEFKS CKTKTKGKYK CETCNRVFKS 240 YQALGGHRAS HKKLKVYTPS NKPKLEPTEN AGASTSLPEK KIHECPYCFR VFSSGQALGG 300 HKRSHLIGVA ASASTPARTS TKIGDHNWGL IDLNLPAPVD DDDDDDDDIS QVDQLYAVSD 360 AEFVNYVKR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0033s0440.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024450701.1 | 0.0 | zinc finger protein ZAT9 | ||||
TrEMBL | A0A3N7EQJ9 | 0.0 | A0A3N7EQJ9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s14460.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 3e-36 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0033s0440.1.p |