PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0033s0300.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | SBP | ||||||||
Protein Properties | Length: 262aa MW: 28916.5 Da PI: 8.9464 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 75.2 | 1.1e-23 | 212 | 260 | 1 | 49 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 +Cq+egC+adl++ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrf SapurV1A.0033s0300.3.p 212 RCQAEGCNADLTHAKHYHRRHKVCEFHSKAATVFAAGLTQRFCQQCSRF 260 6***********************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.1E-25 | 206 | 260 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 20.572 | 210 | 261 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.53E-22 | 211 | 260 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.0E-17 | 213 | 260 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MKPPPPSFYL LFFFVSFAGK VKLARSIKLS ILSRGKKMLG YEWGNPSTIM LSGGDEQAAS 60 SQEVEDLNRQ ANIFDHYTTP SFSDNNLFPQ QTSSTLMFQN HPTATSSAHH NFNPLFDPRA 120 YGGSGAPSYS ANHPSLLSLD SIPAITSVAT ATPHFLVPKS EEISRSSDLI TPRIGLDLGG 180 RTYFSSVEDD FVNRLYRRSR PLDPGSSSNA LRCQAEGCNA DLTHAKHYHR RHKVCEFHSK 240 AATVFAAGLT QRFCQQCSRF F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj0_A | 5e-20 | 209 | 260 | 2 | 53 | squamosa promoter-binding protein-like 12 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0033s0300.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011017436.1 | 1e-145 | PREDICTED: squamosa promoter-binding-like protein 8 | ||||
Swissprot | Q8GXL3 | 4e-50 | SPL8_ARATH; Squamosa promoter-binding-like protein 8 | ||||
TrEMBL | B9GPA7 | 1e-140 | B9GPA7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s14320.1 | 1e-140 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.2 | 8e-54 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0033s0300.3.p |
Publications ? help Back to Top | |||
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