PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0033s0300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | SBP | ||||||||
Protein Properties | Length: 363aa MW: 39898.6 Da PI: 9.798 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.7 | 2.2e-40 | 212 | 289 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adl++ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh+lsefD++krsCr+rLa+hn+rrrk+++ SapurV1A.0033s0300.1.p 212 RCQAEGCNADLTHAKHYHRRHKVCEFHSKAATVFAAGLTQRFCQQCSRFHMLSEFDNGKRSCRKRLADHNRRRRKSHQ 289 6**************************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 7.3E-34 | 206 | 274 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.812 | 210 | 287 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.45E-37 | 211 | 288 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.8E-30 | 213 | 286 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MKPPPPSFYL LFFFVSFAGK VKLARSIKLS ILSRGKKMLG YEWGNPSTIM LSGGDEQAAS 60 SQEVEDLNRQ ANIFDHYTTP SFSDNNLFPQ QTSSTLMFQN HPTATSSAHH NFNPLFDPRA 120 YGGSGAPSYS ANHPSLLSLD SIPAITSVAT ATPHFLVPKS EEISRSSDLI TPRIGLDLGG 180 RTYFSSVEDD FVNRLYRRSR PLDPGSSSNA LRCQAEGCNA DLTHAKHYHR RHKVCEFHSK 240 AATVFAAGLT QRFCQQCSRF HMLSEFDNGK RSCRKRLADH NRRRRKSHQV SQENQKSQLQ 300 NAANSSSEIL TMSPPDSGAH SISAATATVS PPRMSLDCFK LRAYQATASS STSSSSLFFS 360 SG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-31 | 206 | 286 | 3 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0033s0300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011017436.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 8 | ||||
Swissprot | Q8GXL3 | 1e-75 | SPL8_ARATH; Squamosa promoter-binding-like protein 8 | ||||
TrEMBL | B9GPA7 | 0.0 | B9GPA7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s14320.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6801 | 33 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 5e-78 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0033s0300.1.p |
Publications ? help Back to Top | |||
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