PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0033s0070.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 367aa    MW: 40964.5 Da    PI: 10.1224
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0033s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.33.5e-2245136187
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 
                             +Wt +e+ aLiea+r+++ +lrrg+lk+++W+ev++++     +    ++++qC++k+e+l+kry+ + +++++   s+ +s++++f
  SapurV1A.0033s0070.1.p  45 CWTPDETVALIEAYRDKWYTLRRGNLKANHWQEVADAVgrrcPASSPPKTAVQCRHKMEKLRKRYRTEIQRARSMpDSRFTSSWVHF 131
                             8***********************************9977667777799*************************9779999****** PP

                trihelix  83 dqlea 87 
                             ++++a
  SapurV1A.0033s0070.1.p 132 KRMDA 136
                             ***85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-2244137No hitNo description
PROSITE profilePS500906.29546106IPR017877Myb-like domain
SMARTSM005957.6E-1753142IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MSAPLKTGSP PFPQDLTPLQ TTALETLPAM PKQPSTNPRR LPPPCWTPDE TVALIEAYRD  60
KWYTLRRGNL KANHWQEVAD AVGRRCPASS PPKTAVQCRH KMEKLRKRYR TEIQRARSMP  120
DSRFTSSWVH FKRMDAMEKG PQAKADYSSE SEGDDNDDDN EDDGDIRGSY LDNYRNGNNV  180
MNTRSIQKLY RNGIGNPGCG GDNNGLNGGN SSLGSSNAGG FRIRIPTGVS IAQPGPKFYA  240
QAEQKHGGSP NMGVNASPNP YLKPKYGGGV GASGRVMRGS EEMGKKRERE PMEELVAAVK  300
VLGDGFVRME QMKMEMAREM ETMRMEMEMK RTEMFLESQQ RIVEAFAKTL SKKKKKRPKR  360
MPLPES*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1351359KKKKKRPKR
2352359KKKKRPKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0033s0070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2772200.0GU277220.1 Populus balsamifera isolate STL13 haplotype A unknown protein gene, partial sequence.
GenBankGU2772220.0GU277222.1 Populus balsamifera isolate WHR03 haplotype A unknown protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301240.10.0trihelix transcription factor ASIL2
TrEMBLB9GP790.0B9GP79_POPTR; Uncharacterized protein
STRINGPOPTR_0014s05010.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46382838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.17e-82Trihelix family protein