PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0032s0540.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 1716aa MW: 192712 Da PI: 5.7105 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.9 | 2e-19 | 28 | 83 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ ql++Le++++ + yps+e+r+eL++klgL++rq ++WF+ rR k+kk SapurV1A.0032s0540.4.p 28 PKRQMKTPFQLQTLEKAYATDTYPSEEMRAELSDKLGLSDRQLQMWFCHRRLKDKK 83 69****************************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.9E-19 | 8 | 84 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.55E-17 | 19 | 84 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.086 | 24 | 84 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.9E-20 | 26 | 88 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.7E-17 | 28 | 83 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.55E-15 | 29 | 84 | No hit | No description |
PROSITE profile | PS50827 | 16.539 | 514 | 573 | IPR018501 | DDT domain |
SMART | SM00571 | 4.0E-21 | 514 | 573 | IPR018501 | DDT domain |
Pfam | PF02791 | 9.9E-17 | 515 | 570 | IPR018501 | DDT domain |
Pfam | PF05066 | 5.5E-15 | 696 | 764 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 3.4E-6 | 904 | 948 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 9.0E-13 | 1087 | 1159 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1716 aa Download sequence Send to blast |
MEEANSEGEN HSKSKSNALN SNEDQGKPKR QMKTPFQLQT LEKAYATDTY PSEEMRAELS 60 DKLGLSDRQL QMWFCHRRLK DKKETPVKQR KAAPLHESPL EDMRIVGADS GSDYGSGSAS 120 GSSPLSESRK VVLDDGHTMK RYYESSPRSV MELRAIACVE AQLGEPLRED GPILGMKFDS 180 LPPDAFGEPI AITEQPKRMG YSYEDKVYER RDAKSSKDPA ITRSDTYGPH IQSPYHDSPV 240 DTLRGRASPF GVGQTPHARL LSQQDKSGHV FLSPQRDDDY LLQQDTFTNN RTSAQSISHP 300 IMGPENSNVF SDAQTFHNDT ELQLERKRRI DEPRTSREVE AYEIRIRKEL EKQDILRRKN 360 EERMRKEMER HDRERRKEEE RSMRDRQREE ERLLREQKRE LERREKFMQK EYLKAEKIRQ 420 KEELRREKEA VKRKAAMEKA TARKIAKDSL DLIEDEQLEL MELTAASKGL ASIVNLDYDT 480 LQNLDSFRDM LITFPSEAVQ LKKSFGFQPW LDSEENIGNL LMVWKFFITF ADVLGLWPFT 540 LNEFVQAFHD YDSRLLGELH VALLKLIIKD IEDVARTPSS GLGINQYYTA NPEGGHPQIV 600 QGAYTWGFDI RNWQQHLNSL TWPEILRQLA LSAGFGPRLK KKSTTWAGLG DIDEVKDCED 660 IVSIIRNGSA AENAFALMRE KGLLLPRRSR HRLTPGTVKF AAFHVLSLEG SKGLTVLELA 720 DKIQKSGLRD LTTSKTPEAS ISVALTRDQK LFERIAPSTY CARAAFRKDP ADAEAILAEA 780 RKKIRIFENG FLGGENADDV ERDEDSEGDA DEDPEVDDLA TPVSSNKSTV HSGKVNALSG 840 SGSGKVSNDT SSTVQHKCEK GLSSFSLNGP KDAVAPSIIE QCVTHKNEGT NNADEENIEI 900 DESNSGESWI QGLTEGEYSH LSVEERLSAL VVLVGISNEG NTIRAVLEDR LEAANVLKKQ 960 MWGEAQLDRS RLKEEFISKL DFPTFTGSKV ETQVASSAVE GSQSPLVLAD GKSKEASPSN 1020 TEDQKSLPED AENNVSCALS EKALVIQDLS MNPDNISAQQ HGYASKRSRS QLKAYIAHLA 1080 EEMYIYRSLP LGQDRRRNRY WQFVASASRN DPCSGRIFVE LHNGSWRVID SEEAFDTFLS 1140 SLDTRGIRES HLCIMLQKIE SSFKENVRRN LGTANIVCQS GTTDEKETAE TDTANCSAGN 1200 SPGSTVCVSS SDTLDAFSLF SIELGRNSAE KKGSLKRYQD FQNWVWKECF NSSTLRAMKY 1260 GNKRCEQLLD TCDLCLDTYL SEDTHCLSCH KTFKFENKKF DFAEHEIQCK VKRKIDPGNA 1320 CTCDSSLPPG TRLLTALLSC IEVSVPQEAL ESFWMGIPRK DWGMKLAMPS STEELLQILT 1380 VFESAIKRER LSSNFETTKE LLGSSALVGS AAHDSASLGL VSVLPWMPKT TAAVALRLFE 1440 LDASIIYVKE EKPEPSADKP VKLYMKLSSR YSPFKNEEVE LKDVKHEEHI KEDIVDLRGK 1500 QSSHKRGRGG RDQGPATKGQ RRMPGLKSDT GKQRSRGIQN LNQGPRQQGK KTNLQATSRG 1560 RRTVRKRRVE KMQPKEPLVG QMTGMASSMS YLSKKTAVHN RYVKSFRNLG DEDWSVKKGR 1620 VNGDENSNMM EEAESDDNAE ELYGKGNWKP GGSNGWNRNS MEASDDDENA SNGIEAMRDD 1680 DSEGDMEMSD GSDRAAANRV QNDGVDSADS DEYSD* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 76 | 83 | RRLKDKKE |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0032s0540.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024436990.1 | 0.0 | homeobox-DDT domain protein RLT1 isoform X2 | ||||
Swissprot | F4HY56 | 0.0 | RLT1_ARATH; Homeobox-DDT domain protein RLT1 | ||||
TrEMBL | A0A2K1YG45 | 0.0 | A0A2K1YG45_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s05660.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28420.1 | 0.0 | homeobox-1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0032s0540.4.p |