PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0032s0350.5.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Dof

Protein Properties

Length: 318aa MW: 34686.5 Da PI: 9.3865

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0032s0350.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.6	1.5e-39	21	81	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ SapurV1A.0032s0350.5.p 21 QQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 81 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	8.3E-34	23	79	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	8.0E-28	24	79	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	25	79	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	27	63	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MASTSKLMER PSQEVLSQTQ QQQALKCPRC DSSNTKFCYY NNYSLSQPRH FCKACKRYWT 60 RGGTLRNVPV GGGCRKNKRV KRPASAVEGA SNSVSSANPN PQTPIDHISS TSNHINPLLY 120 GLSSSNPSEM NLPFPGRFNS RMDSAVSGYH NLQPQLNALA LGFSSGIMST NDANGFNPTK 180 QIQDVVTSNS LLSSYSNLFG SSTTSTNTAS PIASLLASSF NQQNFTNGGI KESKRAPNYF 240 QNMTIPFEEL QMNGNSESGI GIKGVKNDHD QNRLNWNVPC QNQIEQVGFS DPSMYWSTTT 300 SVGSWHDPAN TRSSVLL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0032s0350.5.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT164738	0.0	KT164738.1 Populus tomentosa clone Potom.011G26508 F-box family protein 1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006377384.2	0.0	dof zinc finger protein DOF1.4
TrEMBL	A0A172CDG8	0.0	A0A172CDG8_POPTO; F-box family protein 1
STRING	POPTR_0011s05450.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	1e-39	Dof family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0032s0350.5.p