PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0032s0350.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | Dof | ||||||||
Protein Properties | Length: 318aa MW: 34686.5 Da PI: 9.3865 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.6 | 1.5e-39 | 21 | 81 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ SapurV1A.0032s0350.4.p 21 QQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 81 7899******************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 8.3E-34 | 23 | 79 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 8.0E-28 | 24 | 79 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.525 | 25 | 79 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 27 | 63 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MASTSKLMER PSQEVLSQTQ QQQALKCPRC DSSNTKFCYY NNYSLSQPRH FCKACKRYWT 60 RGGTLRNVPV GGGCRKNKRV KRPASAVEGA SNSVSSANPN PQTPIDHISS TSNHINPLLY 120 GLSSSNPSEM NLPFPGRFNS RMDSAVSGYH NLQPQLNALA LGFSSGIMST NDANGFNPTK 180 QIQDVVTSNS LLSSYSNLFG SSTTSTNTAS PIASLLASSF NQQNFTNGGI KESKRAPNYF 240 QNMTIPFEEL QMNGNSESGI GIKGVKNDHD QNRLNWNVPC QNQIEQVGFS DPSMYWSTTT 300 SVGSWHDPAN TRSSVLL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0032s0350.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT164738 | 0.0 | KT164738.1 Populus tomentosa clone Potom.011G26508 F-box family protein 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006377384.2 | 0.0 | dof zinc finger protein DOF1.4 | ||||
TrEMBL | A0A172CDG8 | 0.0 | A0A172CDG8_POPTO; F-box family protein 1 | ||||
STRING | POPTR_0011s05450.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28310.1 | 1e-39 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0032s0350.4.p |