PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0032s0100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | HSF | ||||||||
Protein Properties | Length: 204aa MW: 23155 Da PI: 8.1163 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 101.9 | 5.6e-32 | 32 | 134 | 2 | 102 |
HHHHHHHHHC...........TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTT CS HSF_DNA-bind 2 Flkklyeile...........deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskek 77 Fl+k+y++le +++ k+++sw+++gn fvv+ + ef++ Lp++Fkh+nf+SF+RQLn+YgFkk+++++ SapurV1A.0032s0100.1.p 32 FLSKTYDLLEeggahgsgddhHPHGKKIVSWNADGNGFVVWSPAEFSELTLPRFFKHNNFSSFIRQLNTYGFKKTSTKQ-------- 110 9*********888777777766799**************************************************9988........ PP SEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 78 iweFkhksFkkgkkellekikrkks 102 weFkh+ F+kg++++l +i rkk SapurV1A.0032s0100.1.p 111 -WEFKHDRFQKGRRHMLFEITRKKC 134 .*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 5.3E-34 | 25 | 126 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 6.3E-39 | 28 | 132 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.99E-25 | 30 | 132 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.2E-28 | 32 | 132 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-8 | 81 | 93 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-8 | 94 | 106 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MAARFSQLDQ DTTSRSSSSS IKSPGTKCPA PFLSKTYDLL EEGGAHGSGD DHHPHGKKIV 60 SWNADGNGFV VWSPAEFSEL TLPRFFKHNN FSSFIRQLNT YGFKKTSTKQ WEFKHDRFQK 120 GRRHMLFEIT RKKCEPSMFP TYLKASSDQE NAAAAMEEAS GLMLMEENKN LRREKLELQI 180 QIAQFEDLET KLVDCLTQQH TGN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5w_B | 5e-16 | 32 | 132 | 4 | 104 | Putative transcription factor |
5d5x_B | 5e-16 | 32 | 132 | 4 | 104 | Putative transcription factor |
5d5x_E | 5e-16 | 32 | 132 | 4 | 104 | Putative transcription factor |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0032s0100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006377347.1 | 1e-114 | heat stress transcription factor A-6b | ||||
TrEMBL | U5FYD0 | 1e-113 | U5FYD0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s05130.1 | 1e-114 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11357 | 28 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32330.1 | 2e-35 | heat shock transcription factor A1D |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0032s0100.1.p |