PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0031s0400.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 250aa    MW: 27721.9 Da    PI: 6.3086
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0031s0400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.28e-051992351354
                             HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                     HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                             R+++++   +Lr ++P  +       ++ +++L +Av+Y+ksL
  SapurV1A.0031s0400.1.p 199 RQKMKKMVKTLRGIVPGgD------QMNTVTVLDEAVRYLKSL 235
                             799*************955......8***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.338186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-6193241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-9195243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-8196242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.41E-6196240No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MHSDWYFRSK EAMPPLTNQV DNTCMHNPGA STFAAVQPLA ARHLMPVHEI EFQSSEICPK  60
NFIIFDQAGH RSQVLYNPAV AHNHIGPSLN IHGTYIQENF ARTYIQENFE RTGTYNVERE  120
ISSSLKEDSD DIDALMSMEE EEQEDCDGEE VSTARTCRNY GSSSPDSCSS YGAKPIKNGS  180
SVQKGSSSGS SSTNSERKRQ KMKKMVKTLR GIVPGGDQMN TVTVLDEAVR YLKSLKVEVQ  240
KLGVGNFKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0031s0400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011011539.11e-137PREDICTED: transcription factor bHLH144-like
RefseqXP_011011540.11e-137PREDICTED: transcription factor bHLH144-like
RefseqXP_011011542.11e-137PREDICTED: transcription factor bHLH144-like
RefseqXP_011011543.11e-137PREDICTED: transcription factor bHLH144-like
RefseqXP_011011544.11e-137PREDICTED: transcription factor bHLH144-like
RefseqXP_011011545.11e-137PREDICTED: transcription factor bHLH144-like
RefseqXP_011011546.11e-137PREDICTED: transcription factor bHLH144-like
TrEMBLB9I1021e-130B9I102_POPTR; Uncharacterized protein
STRINGPOPTR_0011s02710.11e-131(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114111113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.24e-42bHLH family protein