PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0031s0130.6.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 441aa    MW: 48264.3 Da    PI: 7.2231
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0031s0130.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.13.2e-3290147260
                             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                             dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  SapurV1A.0031s0130.6.p  90 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSN-DGQITEIVYKGTHDHPK 147
                             8****************************************.***************85 PP
2WRKY104.84.5e-33255313159
                             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             ldDgy+WrKYGqK v+g+++prsYY+Ct agCpv+k ver+++dpk+v +tYeg+Hnhe
  SapurV1A.0031s0130.6.p 255 LDDGYRWRKYGQKLVRGNPNPRSYYKCTNAGCPVRKLVERASHDPKAVMTTYEGKHNHE 313
                             59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.84884148IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.3E-2788148IPR003657WRKY domain
SuperFamilySSF1182903.79E-2588148IPR003657WRKY domain
SMARTSM007743.9E-3489147IPR003657WRKY domain
PfamPF031066.7E-2590146IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.8E-36240315IPR003657WRKY domain
SuperFamilySSF1182907.32E-29247315IPR003657WRKY domain
PROSITE profilePS5081136.977250315IPR003657WRKY domain
SMARTSM007743.3E-38255314IPR003657WRKY domain
PfamPF031065.0E-26256313IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MNHQQSAQCV EVQRQLQSQS FASSPSVKGE MAVCTNELTL SPPLHMITSG SSAPAEVDSD  60
ELNQMGLSSS GLRASQSDHK TGSAPTMSSD DGYNWRKYGQ KHVKGSEFPR SYYKCTHPNC  120
EVKKLFERSN DGQITEIVYK GTHDHPKPQP SRRYASGSVL FTQEERFDKF SSLPSQDDKS  180
PRVCGQVSHA IEPDSAPELS PGTTNDDTGE GAEDDEDPFL KRRRLDAGGF DVTPVIKPIR  240
EPRVVVQTLS EIDILDDGYR WRKYGQKLVR GNPNPRSYYK CTNAGCPVRK LVERASHDPK  300
AVMTTYEGKH NHEVPTAKTN SHDTAGPSAG NGTSRTRPDK NETISLHLGV GISSTSENWS  360
GDQRQALHAE LVGIENQSSG SSFRIVRASP IAAYYGVLNG GMNQYGSRQI PSEGRRIEIP  420
PLSHSSYPYP QNVGSLLSGP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-3490315877Probable WRKY transcription factor 4
2lex_A2e-3490315877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220224KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0031s0130.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2080470.0AC208047.1 Populus trichocarpa clone JGIACSB05-H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011011134.10.0PREDICTED: probable WRKY transcription factor 20 isoform X1
RefseqXP_011011135.10.0PREDICTED: probable WRKY transcription factor 20 isoform X2
SwissprotQ93WV01e-154WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A2K1YHI50.0A0A2K1YHI5_POPTR; Uncharacterized protein
TrEMBLA0A3N7FR290.0A0A3N7FR29_POPTR; Uncharacterized protein
STRINGPOPTR_0001s37260.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-149WRKY family protein