PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0031s0130.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 514aa MW: 56419.9 Da PI: 8.3086 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.8 | 3.9e-32 | 163 | 220 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk ers+ d++++ei+Y+g+H+h+k SapurV1A.0031s0130.4.p 163 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSN-DGQITEIVYKGTHDHPK 220 8****************************************.***************85 PP | |||||||
2 | WRKY | 104.5 | 5.6e-33 | 328 | 386 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK v+g+++prsYY+Ct agCpv+k ver+++dpk+v +tYeg+Hnhe SapurV1A.0031s0130.4.p 328 LDDGYRWRKYGQKLVRGNPNPRSYYKCTNAGCPVRKLVERASHDPKAVMTTYEGKHNHE 386 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.848 | 157 | 221 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.84E-25 | 161 | 221 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.5E-27 | 161 | 221 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.9E-34 | 162 | 220 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.3E-25 | 163 | 219 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 8.6E-36 | 313 | 388 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.15E-29 | 320 | 388 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 36.977 | 323 | 388 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.3E-38 | 328 | 387 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.2E-26 | 329 | 386 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 514 aa Download sequence Send to blast |
MRALGHSGIM QLAYILIFYT LKSCLLDLLV LCLKNIFRLI PIVLASQVEP SPTTGTFTNP 60 QTVPGSLSST SYSATSVSST TVGERKSNCF EFRPHARSDM VSADMNHQQS AQCVEVQRQL 120 QSQSFASSPS VKDELNQMGL SSSGLRASQS DHKTGSAPTM SSDDGYNWRK YGQKHVKGSE 180 FPRSYYKCTH PNCEVKKLFE RSNDGQITEI VYKGTHDHPK PQPSRRYASG SVLFTQEERF 240 DKFSSLPSQD DKSPRVCGQV SHAIEPDSAP ELSPGTTNDD TGEGAEDDED PFLKRRRLDA 300 GGFDVTPVIK PIREPRVVVQ TLSEIDILDD GYRWRKYGQK LVRGNPNPRS YYKCTNAGCP 360 VRKLVERASH DPKAVMTTYE GKHNHEVPTA KTNSHDTAGP SAGNGTSRTR PDKNETISLH 420 LGVGISSTSE NWSGDQRQAL HAELVGIENQ SSGSSFRIVR ASPIAAYYGV LNGGMNQYGS 480 RQIPSEGRRI EIPPLSHSSY PYPQNVGSLL SGP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-34 | 163 | 388 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 5e-34 | 163 | 388 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 293 | 297 | KRRRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0031s0130.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC208047 | 0.0 | AC208047.1 Populus trichocarpa clone JGIACSB05-H10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011011134.1 | 0.0 | PREDICTED: probable WRKY transcription factor 20 isoform X1 | ||||
Swissprot | Q93WV0 | 1e-163 | WRK20_ARATH; Probable WRKY transcription factor 20 | ||||
TrEMBL | A0A3N7FR29 | 0.0 | A0A3N7FR29_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s37260.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.1 | 1e-152 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0031s0130.4.p |