PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0031s0130.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 532aa    MW: 57962.1 Da    PI: 8.0353
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0031s0130.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.74.1e-32181238260
                             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                             dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  SapurV1A.0031s0130.3.p 181 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSN-DGQITEIVYKGTHDHPK 238
                             8****************************************.***************85 PP
2WRKY104.55.9e-33346404159
                             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             ldDgy+WrKYGqK v+g+++prsYY+Ct agCpv+k ver+++dpk+v +tYeg+Hnhe
  SapurV1A.0031s0130.3.p 346 LDDGYRWRKYGQKLVRGNPNPRSYYKCTNAGCPVRKLVERASHDPKAVMTTYEGKHNHE 404
                             59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.848175239IPR003657WRKY domain
SuperFamilySSF1182905.1E-25179239IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.7E-27179239IPR003657WRKY domain
SMARTSM007743.9E-34180238IPR003657WRKY domain
PfamPF031068.7E-25181237IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.0E-36331406IPR003657WRKY domain
SuperFamilySSF1182909.68E-29338406IPR003657WRKY domain
PROSITE profilePS5081136.977341406IPR003657WRKY domain
SMARTSM007743.3E-38346405IPR003657WRKY domain
PfamPF031066.5E-26347404IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MNNVKSHPEV SDGSDQTMPD AGGSARYKLM SPAKLPISRS SCIMISPGLS PTSFLESPVL  60
LSNVKVEPSP TTGTFTNPQT VPGSLSSTSY SATSVSSTTV GERKSNCFEF RPHARSDMVS  120
ADMNHQQSAQ CVEVQRQLQS QSFASSPSVK DELNQMGLSS SGLRASQSDH KTGSAPTMSS  180
DDGYNWRKYG QKHVKGSEFP RSYYKCTHPN CEVKKLFERS NDGQITEIVY KGTHDHPKPQ  240
PSRRYASGSV LFTQEERFDK FSSLPSQDDK SPRVCGQVSH AIEPDSAPEL SPGTTNDDTG  300
EGAEDDEDPF LKRRRLDAGG FDVTPVIKPI REPRVVVQTL SEIDILDDGY RWRKYGQKLV  360
RGNPNPRSYY KCTNAGCPVR KLVERASHDP KAVMTTYEGK HNHEVPTAKT NSHDTAGPSA  420
GNGTSRTRPD KNETISLHLG VGISSTSENW SGDQRQALHA ELVGIENQSS GSSFRIVRAS  480
PIAAYYGVLN GGMNQYGSRQ IPSEGRRIEI PPLSHSSYPY PQNVGSLLSG P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-34181406877Probable WRKY transcription factor 4
2lex_A4e-34181406877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311315KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0031s0130.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2080470.0AC208047.1 Populus trichocarpa clone JGIACSB05-H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024437369.10.0probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A2I4KKZ50.0A0A2I4KKZ5_POPTR; WRKY family protein
STRINGPOPTR_0001s37260.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-177WRKY family protein