PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0031s0130.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 563aa MW: 61089.6 Da PI: 7.2575 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.6 | 4.5e-32 | 212 | 269 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk ers+ d++++ei+Y+g+H+h+k SapurV1A.0031s0130.1.p 212 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSN-DGQITEIVYKGTHDHPK 269 8****************************************.***************85 PP | |||||||
2 | WRKY | 104.4 | 6.3e-33 | 377 | 435 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK v+g+++prsYY+Ct agCpv+k ver+++dpk+v +tYeg+Hnhe SapurV1A.0031s0130.1.p 377 LDDGYRWRKYGQKLVRGNPNPRSYYKCTNAGCPVRKLVERASHDPKAVMTTYEGKHNHE 435 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.848 | 206 | 270 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.2E-27 | 210 | 270 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.49E-25 | 210 | 270 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.9E-34 | 211 | 269 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.4E-25 | 212 | 268 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 9.8E-36 | 362 | 437 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.05E-28 | 369 | 437 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 36.977 | 372 | 437 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.3E-38 | 377 | 436 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.0E-26 | 378 | 435 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 563 aa Download sequence Send to blast |
MNNVKSHPEV SDGSDQTMPD AGGSARYKLM SPAKLPISRS SCIMISPGLS PTSFLESPVL 60 LSNVKVEPSP TTGTFTNPQT VPGSLSSTSY SATSVSSTTV GERKSNCFEF RPHARSDMVS 120 ADMNHQQSAQ CVEVQRQLQS QSFASSPSVK GEMAVCTNEL TLSPPLHMIT SGSSAPAEVD 180 SDELNQMGLS SSGLRASQSD HKTGSAPTMS SDDGYNWRKY GQKHVKGSEF PRSYYKCTHP 240 NCEVKKLFER SNDGQITEIV YKGTHDHPKP QPSRRYASGS VLFTQEERFD KFSSLPSQDD 300 KSPRVCGQVS HAIEPDSAPE LSPGTTNDDT GEGAEDDEDP FLKRRRLDAG GFDVTPVIKP 360 IREPRVVVQT LSEIDILDDG YRWRKYGQKL VRGNPNPRSY YKCTNAGCPV RKLVERASHD 420 PKAVMTTYEG KHNHEVPTAK TNSHDTAGPS AGNGTSRTRP DKNETISLHL GVGISSTSEN 480 WSGDQRQALH AELVGIENQS SGSSFRIVRA SPIAAYYGVL NGGMNQYGSR QIPSEGRRIE 540 IPPLSHSSYP YPQNVGSLLS GP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-34 | 212 | 437 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 5e-34 | 212 | 437 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 342 | 346 | KRRRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0031s0130.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC208047 | 0.0 | AC208047.1 Populus trichocarpa clone JGIACSB05-H10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024437369.1 | 0.0 | probable WRKY transcription factor 20 isoform X1 | ||||
Swissprot | Q93WV0 | 0.0 | WRK20_ARATH; Probable WRKY transcription factor 20 | ||||
TrEMBL | A0A2I4KKZ5 | 0.0 | A0A2I4KKZ5_POPTR; WRKY family protein | ||||
TrEMBL | A0A3N7FUJ4 | 0.0 | A0A3N7FUJ4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s37260.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3946 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.2 | 0.0 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0031s0130.1.p |