PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0030s0420.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | GRAS | ||||||||
Protein Properties | Length: 534aa MW: 59071.9 Da PI: 5.3383 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 447.5 | 9e-137 | 163 | 533 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 l+e+L +cA a+s++d+ +++l+++l++++s +g+p+qRl ay++e+L arla+s+s++ykal+++e + ++ l++++l++ev SapurV1A.0030s0420.1.p 163 LKEALCTCALAISNSDMFTVEWLMSELRQMVSVTGEPIQRLGAYMLEGLVARLASSGSSIYKALRCKEPA---GADLLSYMHLLYEV 246 5789*****************************************************************9...9************* PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeel 172 +P++kf+++ aN aI +av+ e vHiiDf+i qG QW++LlqaLa+Rp+gpp++RiTg+++++s + l +g+rL k+Ae+ SapurV1A.0030s0420.1.p 247 CPYFKFGYMSANGAIADAVKDEISVHIIDFQIAQGSQWVTLLQALAARPGGPPHIRITGIDDSTSAyaRGGGLDIVGKRLLKLAESY 333 **************************************************************998899999**************** PP GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259 +vpfef++ + + +++++e+L v+pgEa++Vn++l+lh+l+d sv ++++rd++L+lvkslsPkvv+++eqe+++++ +F++rf+e SapurV1A.0030s0420.1.p 334 KVPFEFHA-AGVSASEIQVENLGVQPGEAVVVNFALSLHHLPDGSVGTQNHRDRLLRLVKSLSPKVVTLIEQESNTSTVPFFARFVE 419 ********.8999************************************************************************** PP GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346 +l+yy a+f+s++++lpre++eri+vE+++l+re+vn++acegaer+erhe+l+kW +r+e+aGF+p+pls++++ ++k+ll+++++ SapurV1A.0030s0420.1.p 420 TLNYYQAIFESIDVTLPREHKERINVEQHCLAREVVNIIACEGAERVERHEHLGKWISRFEMAGFTPYPLSSFVNFTIKTLLQNYSE 506 **************************************************************************************6 PP GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374 + y++ee++g+l+lgW++rpLv+++aWr SapurV1A.0030s0420.1.p 507 K-YTLEERDGALFLGWMNRPLVAACAWR 533 5.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.947 | 137 | 514 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.1E-134 | 163 | 533 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence Send to blast |
MQTSQKKKIS DGSRRFGDQP MQYQESYSCP PIQNIDVGSQ GTHLLAMTYD QYCTLESSSE 60 ISACPVHNSP STASSSPNEC VVSQPNSQSY HSDLQDSSEN TSGSPGSESY VTHKLRELET 120 AMLGPDSDNL DMYNMTAMPG PNQIVSEAEK WKFLVEMMSR GDLKEALCTC ALAISNSDMF 180 TVEWLMSELR QMVSVTGEPI QRLGAYMLEG LVARLASSGS SIYKALRCKE PAGADLLSYM 240 HLLYEVCPYF KFGYMSANGA IADAVKDEIS VHIIDFQIAQ GSQWVTLLQA LAARPGGPPH 300 IRITGIDDST SAYARGGGLD IVGKRLLKLA ESYKVPFEFH AAGVSASEIQ VENLGVQPGE 360 AVVVNFALSL HHLPDGSVGT QNHRDRLLRL VKSLSPKVVT LIEQESNTST VPFFARFVET 420 LNYYQAIFES IDVTLPREHK ERINVEQHCL AREVVNIIAC EGAERVERHE HLGKWISRFE 480 MAGFTPYPLS SFVNFTIKTL LQNYSEKYTL EERDGALFLG WMNRPLVAAC AWR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-62 | 165 | 533 | 6 | 375 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0030s0420.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011014635.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_011014636.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Swissprot | Q8H125 | 0.0 | SCL5_ARATH; Scarecrow-like protein 5 | ||||
TrEMBL | A0A1X9QM52 | 0.0 | A0A1X9QM52_9ROSI; Phytochrome A signal transduction 1 | ||||
STRING | POPTR_0001s37270.2 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1653 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50600.1 | 0.0 | scarecrow-like 5 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0030s0420.1.p |
Publications ? help Back to Top | |||
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