PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0030s0410.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 561aa MW: 60918.4 Da PI: 7.4141 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.5 | 1e-31 | 213 | 270 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk er++ d++++ei+Y+g+H+h+k SapurV1A.0030s0410.1.p 213 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERAH-DGQITEIIYKGTHDHPK 270 8***************************************9.***************85 PP | |||||||
2 | WRKY | 106.3 | 1.6e-33 | 377 | 435 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+ SapurV1A.0030s0410.1.p 377 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 435 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 1.23E-24 | 210 | 271 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.3E-26 | 211 | 271 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.8E-34 | 212 | 270 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.722 | 213 | 271 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-24 | 213 | 269 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.2E-37 | 362 | 437 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-29 | 369 | 437 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.825 | 372 | 437 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-39 | 377 | 436 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.3E-26 | 378 | 435 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009961 | Biological Process | response to 1-aminocyclopropane-1-carboxylic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 561 aa Download sequence Send to blast |
MDSNNSRSEV SDCSDPTRPE SSGGGARYKL MSPAKLPISR SACITIPPGL SPTSFLESPV 60 LLSNVKAEPS PTTGTFTKPR TVLGSLSSTP YSATTVSSTA CGDRKSDCFE FRPYARSNIV 120 SVDKNHQRSA QCAQVQSQCQ SQSFASPPMV KGEMAVSTNE LSLSAPLHMV ASVTTAPAEV 180 DSDELNQMGL SSSGLQASQS DHRVGSTPSM SSDDGYNWRK YGQKHVKGSE FPRSYYKCTH 240 PNCEVKKLFE RAHDGQITEI IYKGTHDHPK PQPSRRYASG SVLSMQEDRF DKSPSLPSQD 300 DKSPGAYGQV PHAIEPNGAL ELSTGANDDN GEGAEDDDDP FSKRRRLDAG GFDVTPVVKP 360 IREPRVVVQT LSEVDILDDG YRWRKYGQKV VRGNPNPRSY YKCTNAGCPV RKHVERASHD 420 PKAVITTYEG KHNHDVPTAR PNSHDMAGPS AVNGSSRIRP DENETISLDL GVGISSTTEN 480 RSNDRQQALH AERENQATNG SSFRIVHATP IAAYYGVLNG GMNQYGSRQI PGESRSIEIP 540 PLNHSSYPYP QNMGRLLMGP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-36 | 213 | 437 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-36 | 213 | 437 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 342 | 346 | KRRRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00455 | DAP | Transfer from AT4G26640 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0030s0410.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011007625.1 | 0.0 | PREDICTED: probable WRKY transcription factor 20 | ||||
Swissprot | Q93WV0 | 0.0 | WRK20_ARATH; Probable WRKY transcription factor 20 | ||||
TrEMBL | A0A3Q9EDV5 | 0.0 | A0A3Q9EDV5_POPTO; WRKY-like | ||||
STRING | POPTR_0001s37260.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3946 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.2 | 0.0 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0030s0410.1.p |