PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0030s0180.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARF
Protein Properties Length: 898aa    MW: 99154.5 Da    PI: 6.5998
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0030s0180.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.99e-24127228199
                             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                             f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v
  SapurV1A.0030s0180.1.p 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSV 211
                             99*****************************8544444..48********************************************* PP

                             EEEE-SSSEE..EEEEE-S CS
                      B3  81 vFkldgrsefelvvkvfrk 99 
                             +F   ++++ +l+++++r+
  SapurV1A.0030s0180.1.p 212 LFI--WNENNQLLLGIRRA 228
                             ***..7888889****997 PP
2Auxin_resp117.88.7e-39253336183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                             aahaa+t+s F+++YnPras+seF+++++k++ka++ ++vsvGmRf+m+fete+ss rr++Gtv+g+sdld v+WpnS+Wrs+k
  SapurV1A.0030s0180.1.p 253 AAHAAATSSRFTIFYNPRASPSEFIIPLAKYLKAVYyTRVSVGMRFRMMFETEESSVRRYMGTVTGISDLDAVKWPNSHWRSVK 336
                             79*********************************989*******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.72E-49113256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-42119242IPR015300DNA-binding pseudobarrel domain
CDDcd100179.50E-22126227No hitNo description
SMARTSM010192.6E-24127229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.661127229IPR003340B3 DNA binding domain
PfamPF023625.3E-22127228IPR003340B3 DNA binding domain
PfamPF065071.3E-33253336IPR010525Auxin response factor
PROSITE profilePS5174520.444764848IPR000270PB1 domain
SuperFamilySSF542772.35E-5782839No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 898 aa     Download sequence    Send to blast
MRLSSAGFNP QTHEGERRVL NSELWHACAG PLVSLPAVGS RAVYFPQGHS EQVSASTNKE  60
VDTQIPSYPS LPAQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKDA YHPADMGTPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNENNQ LLLGIRRATR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAAATS SRFTIFYNPR ASPSEFIIPL AKYLKAVYYT RVSVGMRFRM  300
MFETEESSVR RYMGTVTGIS DLDAVKWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLA  360
TFPMYPSPFP QRLKRPWSSG LPSFHGLGIK DDDLVKNSSL MWLQGDGDRG IQSLNFQGTG  420
VSPWVQPRVD VSMLGLQNDV YQTMATTAFQ EMTTLDPSKS SAASLLQFQQ HQNLPTRSAA  480
LMHPCMLQKS PPQQTFHHGV QVNKHQSQTP SQSHLIQQQL LHQHLLDSSR QQQPFLQQQQ  540
LADQQIPNGV SAISQYASAS QSLTPPLQAI SLCQQHSYSD SNGNPATSPV VSSLQSLLDS  600
FPPDESSHLL NLPRTNPLMT SSGWPSKRAA VEPLISSGAP QCMLSQVEQL GPLQTSITPS  660
SVSLPPFPGK ECSIDRDGGT DQQNHLLFGV NIEPSSILLQ NGMSSLRGVG SDSDSTTIPF  720
SSNYMSTAGT NFSINPAMTP SNCIDESCFL QSTENVSQGN PPTRTFVMVY KSGSFDRSLD  780
ITKFSNYNEL RSELSRMFGL EGQLEDPLRS GWQLVFIDRE NDVLLLGDGP WPEFVNSVWC  840
IKILSPQEVK QMGNRGLELL NSFPIQRLSN GSCDDHANLH DSKTLSTGIT SVGSLDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1601535745388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0030s0180.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047523.10.0PREDICTED: auxin response factor 6-like isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLB9GJG20.0B9GJG2_POPTR; Auxin response factor
STRINGPOPTR_0001s36900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]