PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0029s0520.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | G2-like | ||||||||
Protein Properties | Length: 400aa MW: 45526.2 Da PI: 9.2599 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.4 | 1.2e-31 | 90 | 143 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+ekAtPk +l+lm+v gL+++hvkSHLQ+YR+ SapurV1A.0029s0520.2.p 90 PRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRS 143 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.9E-30 | 86 | 144 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.628 | 86 | 146 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.33E-14 | 88 | 144 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.8E-23 | 90 | 145 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.0E-8 | 91 | 142 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MEEELKIGDQ EKMDGCEDQA DNTSFMSSQK CSSFDLNEEL ASSGEDIGTA EVSNTDSEKR 60 AEENYANNAT SEERNERKST VRQYVRSKMP RLRWTPDLHL SFVHAVERLG GQEKATPKLV 120 LQLMNVRGLS IAHVKSHLQM YRSKKLDEAG QVLCPTYRSM QGRAGYIPSK FHQMSANPQQ 180 CFRMESGGIV LARNSTEHTF GNSLLHSSSF QRSLSNKNIF SRFQQWGADK HEVSSLARKD 240 LGQGLDTTTA IRPMRPARFF EERRWPPLEM VKNRWKIIRN NPISITCTNS CSPPQAHQNC 300 SSPRSFETNC YWKPTGGNTG NDIKIKQSLF NSSPSIGNFN SFKPELEPSF RVELNRDKML 360 KDKEWLPDLQ LRLSQRVGIN EHKNHCRSKQ EISTKLSLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-17 | 91 | 145 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-17 | 91 | 145 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-17 | 91 | 145 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-17 | 91 | 145 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0029s0520.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024455564.1 | 0.0 | uncharacterized protein LOC7470204 | ||||
TrEMBL | A0A2K2AQG0 | 0.0 | A0A2K2AQG0_POPTR; Uncharacterized protein | ||||
STRING | EOY27983 | 1e-125 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 4e-39 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0029s0520.2.p |