PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0029s0520.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

G2-like

Protein Properties

Length: 400aa MW: 45526.2 Da PI: 9.2599

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0029s0520.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.4	1.2e-31	90	143	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+ekAtPk +l+lm+v gL+++hvkSHLQ+YR+ SapurV1A.0029s0520.1.p 90 PRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRS 143 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.9E-30	86	144	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.628	86	146	IPR017930	Myb domain
SuperFamily	SSF46689	2.33E-14	88	144	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.8E-23	90	145	IPR006447	Myb domain, plants
Pfam	PF00249	1.0E-8	91	142	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MEEELKIGDQ EKMDGCEDQA DNTSFMSSQK CSSFDLNEEL ASSGEDIGTA EVSNTDSEKR 60 AEENYANNAT SEERNERKST VRQYVRSKMP RLRWTPDLHL SFVHAVERLG GQEKATPKLV 120 LQLMNVRGLS IAHVKSHLQM YRSKKLDEAG QVLCPTYRSM QGRAGYIPSK FHQMSANPQQ 180 CFRMESGGIV LARNSTEHTF GNSLLHSSSF QRSLSNKNIF SRFQQWGADK HEVSSLARKD 240 LGQGLDTTTA IRPMRPARFF EERRWPPLEM VKNRWKIIRN NPISITCTNS CSPPQAHQNC 300 SSPRSFETNC YWKPTGGNTG NDIKIKQSLF NSSPSIGNFN SFKPELEPSF RVELNRDKML 360 KDKEWLPDLQ LRLSQRVGIN EHKNHCRSKQ EISTKLSLS*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MEEELKIGDQ EKMDGCEDQA DNTSFMSSQK CSSFDLNEEL ASSGEDIGTA EVSNTDSEKR  60
AEENYANNAT SEERNERKST VRQYVRSKMP RLRWTPDLHL SFVHAVERLG GQEKATPKLV  120
LQLMNVRGLS IAHVKSHLQM YRSKKLDEAG QVLCPTYRSM QGRAGYIPSK FHQMSANPQQ  180
CFRMESGGIV LARNSTEHTF GNSLLHSSSF QRSLSNKNIF SRFQQWGADK HEVSSLARKD  240
LGQGLDTTTA IRPMRPARFF EERRWPPLEM VKNRWKIIRN NPISITCTNS CSPPQAHQNC  300
SSPRSFETNC YWKPTGGNTG NDIKIKQSLF NSSPSIGNFN SFKPELEPSF RVELNRDKML  360
KDKEWLPDLQ LRLSQRVGIN EHKNHCRSKQ EISTKLSLS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-17	91	145	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	91	145	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	91	145	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	91	145	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0029s0520.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024455564.1	0.0	uncharacterized protein LOC7470204
TrEMBL	A0A2K2AQG0	0.0	A0A2K2AQG0_POPTR; Uncharacterized protein
STRING	EOY27983	1e-125	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3012	32	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	4e-39	G2-like family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0029s0520.1.p