PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0029s0340.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 238aa MW: 26472.6 Da PI: 5.3608 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.7 | 6.5e-30 | 45 | 103 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+ver++ dp+++++tY+ eHnh+ SapurV1A.0029s0340.2.p 45 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERNKVDPTMLVVTYSCEHNHP 103 69*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 32.064 | 39 | 105 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.0E-31 | 40 | 105 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.15E-25 | 41 | 105 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.1E-34 | 44 | 104 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-25 | 46 | 103 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MEDEIFDMMV LICISKKAMQ KRIVSVPIKD LEGPRLKGEN ASPPSDSWAW RKYGQKPIKG 60 SPYPRGYYRC SSSKGCPARK QVERNKVDPT MLVVTYSCEH NHPWPPPSRS THHHNHNSSS 120 PKHTSTTKPE VSTTQPEDPE PEPAEEKSTD LGNGESLISN TTTSDEFSWF GEMETTSSTI 180 LETPIFAEAA ADADTASMFF PMREEDESLF ADLGELPECS LVFRHHRGGV GPQVQMC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 8e-21 | 21 | 105 | 6 | 79 | Disease resistance protein RRS1 |
5w3x_D | 8e-21 | 21 | 105 | 6 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0029s0340.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002317397.1 | 1e-133 | probable WRKY transcription factor 65 | ||||
Refseq | XP_024436630.1 | 1e-133 | probable WRKY transcription factor 65 | ||||
Swissprot | Q9LP56 | 1e-79 | WRK65_ARATH; Probable WRKY transcription factor 65 | ||||
TrEMBL | B9I1H9 | 1e-132 | B9I1H9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s06990.1 | 1e-132 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 1e-75 | WRKY DNA-binding protein 65 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0029s0340.2.p |
Publications ? help Back to Top | |||
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