PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0029s0340.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

WRKY

Protein Properties

Length: 238aa MW: 26472.6 Da PI: 5.3608

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0029s0340.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.7	6.5e-30	45	103	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+ver++ dp+++++tY+ eHnh+ SapurV1A.0029s0340.2.p 45 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERNKVDPTMLVVTYSCEHNHP 103 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	32.064	39	105	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	3.0E-31	40	105	IPR003657	WRKY domain
SuperFamily	SSF118290	1.15E-25	41	105	IPR003657	WRKY domain
SMART	SM00774	5.1E-34	44	104	IPR003657	WRKY domain
Pfam	PF03106	1.0E-25	46	103	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MEDEIFDMMV LICISKKAMQ KRIVSVPIKD LEGPRLKGEN ASPPSDSWAW RKYGQKPIKG 60 SPYPRGYYRC SSSKGCPARK QVERNKVDPT MLVVTYSCEH NHPWPPPSRS THHHNHNSSS 120 PKHTSTTKPE VSTTQPEDPE PEPAEEKSTD LGNGESLISN TTTSDEFSWF GEMETTSSTI 180 LETPIFAEAA ADADTASMFF PMREEDESLF ADLGELPECS LVFRHHRGGV GPQVQMC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	8e-21	21	105	6	79	Disease resistance protein RRS1
5w3x_D	8e-21	21	105	6	79	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0029s0340.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002317397.1	1e-133	probable WRKY transcription factor 65
Refseq	XP_024436630.1	1e-133	probable WRKY transcription factor 65
Swissprot	Q9LP56	1e-79	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	B9I1H9	1e-132	B9I1H9_POPTR; Uncharacterized protein
STRING	POPTR_0011s06990.1	1e-132	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	1e-75	WRKY DNA-binding protein 65

Link Out ? help Back to Top
Phytozome	SapurV1A.0029s0340.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]