PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0029s0340.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

WRKY

Protein Properties

Length: 269aa MW: 29744.8 Da PI: 5.4036

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0029s0340.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.4	8.1e-30	76	134	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+ver++ dp+++++tY+ eHnh+ SapurV1A.0029s0340.1.p 76 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERNKVDPTMLVVTYSCEHNHP 134 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	32.064	70	136	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	3.8E-31	71	136	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-25	72	136	IPR003657	WRKY domain
SMART	SM00774	5.1E-34	75	135	IPR003657	WRKY domain
Pfam	PF03106	1.3E-25	77	134	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MDSRLNINPL KSDELEENDS STQENGPESS LSNDMKMAST SSQKKSKKAM QKRIVSVPIK 60 DLEGPRLKGE NASPPSDSWA WRKYGQKPIK GSPYPRGYYR CSSSKGCPAR KQVERNKVDP 120 TMLVVTYSCE HNHPWPPPSR STHHHNHNSS SPKHTSTTKP EVSTTQPEDP EPEPAEEKST 180 DLGNGESLIS NTTTSDEFSW FGEMETTSST ILETPIFAEA AADADTASMF FPMREEDESL 240 FADLGELPEC SLVFRHHRGG VGPQVQMC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	9e-21	52	136	6	79	Disease resistance protein RRS1
5w3x_D	9e-21	52	136	6	79	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0029s0340.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002317397.1	1e-154	probable WRKY transcription factor 65
Refseq	XP_024436630.1	1e-154	probable WRKY transcription factor 65
Swissprot	Q9LP56	1e-85	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	B9I1H9	1e-153	B9I1H9_POPTR; Uncharacterized protein
STRING	POPTR_0011s06990.1	1e-154	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2770	34	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	6e-74	WRKY DNA-binding protein 65

Link Out ? help Back to Top
Phytozome	SapurV1A.0029s0340.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]