PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0028s0510.3.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

bHLH

Protein Properties

Length: 466aa MW: 51053.7 Da PI: 5.9901

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0028s0510.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.7	1.3e-05	358	395	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L SapurV1A.0028s0510.3.p 358 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 395 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.973	346	395	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.09E-5	356	399	No hit	No description
SuperFamily	SSF47459	5.1E-10	356	402	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.5E-8	360	399	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MAEEFQAGIC GENWWMNPSK SVFMGGLSPY STVSIASDHT GTYGSWTTAD MVDLKARSIS 60 CRESKNITTS ASDTSIPFLN SQKPQQPDSD SGGSSILIDS TLQMMGFGLS SSSSSSSDWN 120 QALLPGNGRT ESYNSMMQEE MNSGGLNSSQ IQKDWSPKSY TSTAEDFSLD QQRLNQVNSS 180 TTSPQTCQGF STGFSMEPSA SYGYPSTLIQ SFFDPENPQL QQAQSLFSNQ IMNYLSPAAP 240 NYGTNMAELS SPSWPKVSPL IKSSFPKQQP NSLHFTNNTP YWNASPTGIN DIRANLLPPS 300 QSQFLVPDFE EKSNCSKFTT KPSKEVRDSV SVLKKGSQPS FKRPRIETPS PLPTFKVRKE 360 KLGDRITALQ QLVSPFGKTD TASVLHEAIE YIKFLHDQVL STPYMKNANP IHHQQAPADK 420 SNDLEGPKQD LRSRGLCLVP VSSTFPVATE TTADFWTPTF GGTFR*

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MAEEFQAGIC GENWWMNPSK SVFMGGLSPY STVSIASDHT GTYGSWTTAD MVDLKARSIS  60
CRESKNITTS ASDTSIPFLN SQKPQQPDSD SGGSSILIDS TLQMMGFGLS SSSSSSSDWN  120
QALLPGNGRT ESYNSMMQEE MNSGGLNSSQ IQKDWSPKSY TSTAEDFSLD QQRLNQVNSS  180
TTSPQTCQGF STGFSMEPSA SYGYPSTLIQ SFFDPENPQL QQAQSLFSNQ IMNYLSPAAP  240
NYGTNMAELS SPSWPKVSPL IKSSFPKQQP NSLHFTNNTP YWNASPTGIN DIRANLLPPS  300
QSQFLVPDFE EKSNCSKFTT KPSKEVRDSV SVLKKGSQPS FKRPRIETPS PLPTFKVRKE  360
KLGDRITALQ QLVSPFGKTD TASVLHEAIE YIKFLHDQVL STPYMKNANP IHHQQAPADK  420
SNDLEGPKQD LRSRGLCLVP VSSTFPVATE TTADFWTPTF GGTFR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0028s0510.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006383985.1	0.0	transcription factor bHLH112 isoform X2
TrEMBL	A0A2K2AP24	0.0	A0A2K2AP24_POPTR; Uncharacterized protein
STRING	POPTR_0004s02870.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	5e-59	bHLH family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0028s0510.3.p