PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0028s0510.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 469aa    MW: 51354 Da    PI: 5.9901
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0028s0510.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.71.3e-053583951254
                             HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  SapurV1A.0028s0510.1.p 358 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 395
                             677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.973346395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.99E-6356400No hitNo description
SuperFamilySSF474591.96E-11356410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-8360403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MAEEFQAGIC GENWWMNPSK SVFMGGLSPY STVSIASDHT GTYGSWTTAD MVDLKARSIS  60
CRESKNITTS ASDTSIPFLN SQKPQQPDSD SGGSSILIDS TLQMMGFGLS SSSSSSSDWN  120
QALLPGNGRT ESYNSMMQEE MNSGGLNSSQ IQKDWSPKSY TSTAEDFSLD QQRLNQVNSS  180
TTSPQTCQGF STGFSMEPSA SYGYPSTLIQ SFFDPENPQL QQAQSLFSNQ IMNYLSPAAP  240
NYGTNMAELS SPSWPKVSPL IKSSFPKQQP NSLHFTNNTP YWNASPTGIN DIRANLLPPS  300
QSQFLVPDFE EKSNCSKFTT KPSKEVRDSV SVLKKGSQPS FKRPRIETPS PLPTFKVRKE  360
KLGDRITALQ QLVSPFGKTD TASVLHEAIE YIKFLHDQVS VLSTPYMKNA NPIHHQQAPA  420
DKSNDLEGPK QDLRSRGLCL VPVSSTFPVA TETTADFWTP TFGGTFRN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0028s0510.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455849.10.0transcription factor bHLH112 isoform X3
TrEMBLA0A2K2AP180.0A0A2K2AP18_POPTR; Uncharacterized protein
STRINGPOPTR_0004s02870.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.12e-61bHLH family protein