PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0028s0330.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 195aa MW: 21762.8 Da PI: 9.0826 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.1 | 7.5e-09 | 38 | 84 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRdr+N++f eL ll + + + ++K++iL A + + +L SapurV1A.0028s0330.2.p 38 KACREKMRRDRLNDRFMELGALLDPG---RPPNVDKSAILVDAARMVTHL 84 678********************997...6788***********999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.103 | 33 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.29E-6 | 37 | 89 | No hit | No description |
Pfam | PF00010 | 1.5E-6 | 38 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.2E-7 | 39 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-12 | 39 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.2E-12 | 40 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MQSSSVEFNN SLENSDGLKE IRSQKRVRPQ SGNALGSKAC REKMRRDRLN DRFMELGALL 60 DPGRPPNVDK SAILVDAARM VTHLREESQK LKESNESLQE KIDELKAEKN ELRDEKQRLK 120 TEKENLEWQL KALSPPPTYL PHPPGIPAPF SAPGQVVGGK LMPFVGYPGI SMWQFMPPAV 180 VDTSQDHALR PPVA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0028s0330.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC208735 | 1e-93 | AC208735.1 Populus trichocarpa clone JGIACSB1077-D05, complete sequence. | |||
GenBank | AC216845 | 1e-93 | AC216845.1 Populus trichocarpa clone POP068-B18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002316706.3 | 1e-114 | transcription factor ILR3 | ||||
Swissprot | Q9FH37 | 1e-84 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A1X9IVC5 | 1e-115 | A0A1X9IVC5_POPTO; Uncharacterized protein | ||||
STRING | POPTR_0011s03360.1 | 1e-115 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 2e-79 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0028s0330.2.p |