PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0028s0060.6.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 563aa    MW: 61978.8 Da    PI: 7.5875
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0028s0060.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.41.3e-18351450198
                             EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                             f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     +  +L++gD+v+F+
  SapurV1A.0028s0060.6.p 351 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLRVQDSTGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVTFS 436
                             89**************************555567778***************9989999999***9.******************** PP

                             E-SSSEE..EEEEE- CS
                      B3  84 ldgrsefelvvkvfr 98 
                             + +  e++lv+++++
  SapurV1A.0028s0060.6.p 437 RLE-PEGKLVMGFRK 450
                             766.77777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS01359061118IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:2.40.330.107.7E-31347459IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-21349450No hitNo description
SuperFamilySSF1019361.12E-19349451IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-15351450IPR003340B3 DNA binding domain
PROSITE profilePS5086311.18351452IPR003340B3 DNA binding domain
SMARTSM010191.3E-18351451IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MSSPPPPLPT STTATTANNN YNASCSSSST VLSIKCFNSD CTDVKSRKGW RLRSGDFAEL  60
CDRCASAYEE GSFCEAFHSR ASGWRCCESC GKRVHCGCIV SIQAFTLLDA GGIACLACAR  120
KSFVLTSNPA WSPLFYHASF PERLKDLSVK SWSQLAGSGP VPWRQAPSLF NPSATPAMQS  180
ELQTRMPYEV DRLNTGETFS APSLEKRKVE DFSEKFINGN LRIRLRDIVE NGNAGIIGEE  240
QSQTPSSLME DASAQQFGIS IPYKSLSESN SQIEGSVNAL QPAPPPPFTK HFHGSLHNGV  300
DSSVDGHIRN GKPRTDARGR SQLLPRYWPR FTDGELHQIS GNSNSVIKPL FEKMLSASDA  360
GRIGRLVLPK KCAEAYFPPI SQPEGLPLRV QDSTGKEWIF QFRFWPNNNS RMYVLEGVTP  420
CIQNMQLQAG DTVTFSRLEP EGKLVMGFRK ATSATPSDQD NETSQIGNGV STKGDAELDH  480
SPWSKVDKSG YIAKEVLEGK SSIRKRKSST LGSKSKRLRI EKEDMIELKL TWEEAQGLLR  540
PPPDHVPSIV AIEGFEFEEY EV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C1e-653294541126B3 domain-containing transcription repressor VAL1
5yzz_C1e-653294541126B3 domain-containing transcription repressor VAL1
5z00_C1e-653294541126B3 domain-containing transcription repressor VAL1
5z00_G1e-653294541126B3 domain-containing transcription repressor VAL1
5z00_K1e-653294541126B3 domain-containing transcription repressor VAL1
5z00_M1e-653294541126B3 domain-containing transcription repressor VAL1
6j9a_A1e-653294542127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0028s0060.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455351.10.0B3 domain-containing protein Os07g0563300 isoform X1
SwissprotQ0D5G41e-161Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A3N7G8N80.0A0A3N7G8N8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s03530.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.11e-135VP1/ABI3-like 3