PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0028s0060.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 851aa    MW: 93311.6 Da    PI: 6.9899
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0028s0060.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.52.4e-18297396198
                             EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                             f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     +  +L++gD+v+F+
  SapurV1A.0028s0060.4.p 297 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLRVQDSTGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVTFS 382
                             89**************************555567778***************9989999999***9.******************** PP

                             E-SSSEE..EEEEE- CS
                      B3  84 ldgrsefelvvkvfr 98 
                             + +  e++lv+++++
  SapurV1A.0028s0060.4.p 383 RLE-PEGKLVMGFRK 396
                             766.77777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS01359061118IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:2.40.330.101.5E-30293405IPR015300DNA-binding pseudobarrel domain
CDDcd100172.81E-21295396No hitNo description
SuperFamilySSF1019362.09E-19295397IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.18297398IPR003340B3 DNA binding domain
PfamPF023622.2E-15297396IPR003340B3 DNA binding domain
SMARTSM010191.3E-18297397IPR003340B3 DNA binding domain
PROSITE profilePS5105014.664523573IPR011124Zinc finger, CW-type
PfamPF074964.1E-13528570IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    Send to blast
MSSPPPPLPT STTATTANNN YNASCSSSST VLSIKCFNSD CTDVKSRKGW RLRSGDFAEL  60
CDRCASAYEE GSFCEAFHSR ASGWRCCESC GKRVHCGCIV SIQAFTLLDA GGIACLACAR  120
KSFVLSELQT RMPYEVDRLN TGETFSAPSL EKRKVEDFSE KFINGNLRIR LRDIVENGNA  180
GIIGEEQSQT PSSLMEDASA QQFGISIPYK SLSESNSQIE GSVNALQPAP PPPFTKHFHG  240
SLHNGVDSSV DGHIRNGKPR TDARGRSQLL PRYWPRFTDG ELHQISGNSN SVIKPLFEKM  300
LSASDAGRIG RLVLPKKCAE AYFPPISQPE GLPLRVQDST GKEWIFQFRF WPNNNSRMYV  360
LEGVTPCIQN MQLQAGDTVT FSRLEPEGKL VMGFRKATSA TPSDQDNETS QIGNGVSTKG  420
DAELDHSPWS KVDKSGYIAK EVLEGKSSIR KRKSSTLGSK SKRLRIEKED MIELKLTWEE  480
AQGLLRPPPD HVPSIVAIEG FEFEEYEDAP VLGKPTIFAT DNVGQKVQWV QCEDCLKWRK  540
LPANTLLPSK WACSSNTWDP ERSSCSVAQE LTAEQLEYLI PSLVASKRSK DARKEIDRVE  600
ALEGEGLDTL ANLAILGEGE AFPASSQATT KHPRHRPGCS CIVCIQPPSG KGPKHKQTCT  660
CTVCQTVKRR FKTLMMKREK KQSEKEAETK QSEKEAETTR KKPQEPSAEK LLDDEPSPSS  720
NTGSESGSPN KKKTVSEGSD DDPKRMKSST SPFKGQIDLN IQPEREDDLS PGSDSGGGMM  780
RMLQDATETF LRMQRFLSSD GDNNPSGNHM LSSGGTGEKI SDATMRGSSH QDADKDHPSA  840
FSMNASAPAT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C4e-642754001126B3 domain-containing transcription repressor VAL1
5yzz_C4e-642754001126B3 domain-containing transcription repressor VAL1
5z00_C4e-642754001126B3 domain-containing transcription repressor VAL1
5z00_G4e-642754001126B3 domain-containing transcription repressor VAL1
5z00_K4e-642754001126B3 domain-containing transcription repressor VAL1
5z00_M4e-642754001126B3 domain-containing transcription repressor VAL1
6j9a_A3e-642754002127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0028s0060.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455352.10.0B3 domain-containing protein Os07g0563300 isoform X2
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A3N7EXY80.0A0A3N7EXY8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s03530.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1