PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0028s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 908aa    MW: 99566.8 Da    PI: 7.3773
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0028s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.42.6e-18351450198
                             EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                             f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     +  +L++gD+v+F+
  SapurV1A.0028s0060.1.p 351 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLRVQDSTGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVTFS 436
                             89**************************555567778***************9989999999***9.******************** PP

                             E-SSSEE..EEEEE- CS
                      B3  84 ldgrsefelvvkvfr 98 
                             + +  e++lv+++++
  SapurV1A.0028s0060.1.p 437 RLE-PEGKLVMGFRK 450
                             766.77777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS01359061118IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:2.40.330.101.6E-30347459IPR015300DNA-binding pseudobarrel domain
CDDcd100173.17E-21349450No hitNo description
SuperFamilySSF1019362.35E-19349451IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.18351452IPR003340B3 DNA binding domain
SMARTSM010191.3E-18351451IPR003340B3 DNA binding domain
PfamPF023622.5E-15351450IPR003340B3 DNA binding domain
PROSITE profilePS5105014.664577627IPR011124Zinc finger, CW-type
PfamPF074964.5E-13582624IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 908 aa     Download sequence    Send to blast
MSSPPPPLPT STTATTANNN YNASCSSSST VLSIKCFNSD CTDVKSRKGW RLRSGDFAEL  60
CDRCASAYEE GSFCEAFHSR ASGWRCCESC GKRVHCGCIV SIQAFTLLDA GGIACLACAR  120
KSFVLTSNPA WSPLFYHASF PERLKDLSVK SWSQLAGSGP VPWRQAPSLF NPSATPAMQS  180
ELQTRMPYEV DRLNTGETFS APSLEKRKVE DFSEKFINGN LRIRLRDIVE NGNAGIIGEE  240
QSQTPSSLME DASAQQFGIS IPYKSLSESN SQIEGSVNAL QPAPPPPFTK HFHGSLHNGV  300
DSSVDGHIRN GKPRTDARGR SQLLPRYWPR FTDGELHQIS GNSNSVIKPL FEKMLSASDA  360
GRIGRLVLPK KCAEAYFPPI SQPEGLPLRV QDSTGKEWIF QFRFWPNNNS RMYVLEGVTP  420
CIQNMQLQAG DTVTFSRLEP EGKLVMGFRK ATSATPSDQD NETSQIGNGV STKGDAELDH  480
SPWSKVDKSG YIAKEVLEGK SSIRKRKSST LGSKSKRLRI EKEDMIELKL TWEEAQGLLR  540
PPPDHVPSIV AIEGFEFEEY EDAPVLGKPT IFATDNVGQK VQWVQCEDCL KWRKLPANTL  600
LPSKWACSSN TWDPERSSCS VAQELTAEQL EYLIPSCKLV VASKRSKDAR KEIDRVEALE  660
GEGLDTLANL AILGEGEAFP ASSQATTKHP RHRPGCSCIV CIQPPSGKGP KHKQTCTCTV  720
CQTVKRRFKT LMMKREKKQS EKEAETKQSE KEAETTRKKP QEPSAEKLLD DEPSPSSNTG  780
SESGSPNKKK TVSEGSDDDP KRMKSSTSPF KGQIDLNIQP EREDDLSPGS DSGGGMMRML  840
QDATETFLRM QRFLSSDGDN NPSGNHMLSS GGTGEKISDA TMRGSSHQDA DKDHPSAFSM  900
NASAPAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A7e-643294542127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0028s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455352.10.0B3 domain-containing protein Os07g0563300 isoform X2
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A3N7EXY80.0A0A3N7EXY8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s03530.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77383138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-154HSI2-like 1