PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0027s0420.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NF-YA
Protein Properties Length: 311aa    MW: 34250.2 Da    PI: 9.7703
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0027s0420.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.48.5e-32170226158
               CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                             +ep+YVNaKQ+++I++RRq+Rak+e ekk   k rkpylheSRh+hA+rR+Rg+gGrF
  SapurV1A.0027s0420.3.p 170 EEPVYVNAKQFHGIMRRRQARAKAELEKKA-VKVRKPYLHESRHQHAMRRARGCGGRF 226
                             69***************************9.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.2E-36168229IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.826169229IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.7E-28171226IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.3E-24172194IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860174194IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.3E-24203226IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MMPAKSEKED RRLEHRGQSP LQTNVYSQPW WREVRNSTSL VDSASKLSTV ENLNGSLAKA  60
AIQSQVNTGL QKAAMVNKDT QTDVTSQSDE SNGQEHHLKH IPSPTFVTMG GHLEPNSQME  120
LVGHSIVLTS HPYTDPQYGG MFTSYGAQAM VPQLYGMPHA RMPLPLEMEE EPVYVNAKQF  180
HGIMRRRQAR AKAELEKKAV KVRKPYLHES RHQHAMRRAR GCGGRFLNTK KLDNNATSPT  240
SEKGSGDLNS SGDLEEGKES MVRGMQTPAS SNGHGLSARY HSSSHDGSFL GQQKETTHGN  300
RVSNGAVSIH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-20170234266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0027s0420.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ9144400.0HQ914440.1 Populus euphratica CCAAT-binding transcription factor subunit B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464897.10.0nuclear transcription factor Y subunit A-7
RefseqXP_024464898.10.0nuclear transcription factor Y subunit A-7
TrEMBLA0A2I4KKY30.0A0A2I4KKY3_POPTR; NF-YA family protein
STRINGPOPTR_0009s06540.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.49e-32nuclear factor Y, subunit A1