PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0027s0330.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 119aa MW: 13918.9 Da PI: 11.4583 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.8 | 1.9e-13 | 8 | 100 | 1 | 92 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvv 81 f k l s + +s+rl++p + ++ g++ + + ++d+ ++W++kl++r++ + v+++ W +Fvk++g ++gD vv SapurV1A.0027s0330.1.p 8 FTKLL--SPTDASHRLTIPMANLGDFefpTGQH--AINIEVTDTIAQQWTFKLSIRRNNNPnprPVFAGEWVRFVKEKGRRAGDRVV 90 67778..77888899*******99998775564..4578999***********994444444579********************** PP EEE-SSSEE.. CS B3 82 Fkldgrsefel 92 F++++ +++ + SapurV1A.0027s0330.1.p 91 FSRQEVEGG-M 100 **7654433.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.0E-15 | 2 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.62E-12 | 3 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.051 | 6 | 108 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.71E-11 | 7 | 108 | No hit | No description |
SMART | SM01019 | 0.0019 | 8 | 107 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-9 | 8 | 103 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MQQQRLRFTK LLSPTDASHR LTIPMANLGD FEFPTGQHAI NIEVTDTIAQ QWTFKLSIRR 60 NNNPNPRPVF AGEWVRFVKE KGRRAGDRVV FSRQEVEGGM QYRIRAERKI FKYWVNVQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0027s0330.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011028527.1 | 1e-58 | PREDICTED: B3 domain-containing protein Os02g0764100-like | ||||
TrEMBL | A0A2K2AYH5 | 6e-57 | A0A2K2AYH5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s23010.1 | 1e-57 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11016 | 3 | 36 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0027s0330.1.p |