PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0027s0090.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 403aa    MW: 43972.6 Da    PI: 6.8579
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0027s0090.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.5e-10351396655
                             HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +++Er RR ri +++ +L+el P      +k  + a++L +Av++Ik+Lq
  SapurV1A.0027s0090.4.p 351 SIAERVRRTRISERMRKLQELFPDM----DKQTNTADMLDLAVDHIKNLQ 396
                             689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.732345395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.23E-12348400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.94E-10349400No hitNo description
Gene3DG3DSA:4.10.280.101.4E-11350400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-7351396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-9351401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MSLLYSSGFK SSDGELRKNQ EFMDLNPYHY HQQQQQTQQN SSLMRYRSAP SSFLEILGNG  60
TSGHDGGGGG IGSGDYRYLR SSSPEMDTML ARFMSSCNGS GDSSSQNLQE FGERPAIKQE  120
GEDSEMVYQS LPGHNLVTDN SVSAGNSMDS AFNVMRSMAL ENSMQATKMS TANGSNLARQ  180
NSSPAGLFSD LGVDNGFVVM REGGSFRAGS GTNGEASPAS KLRSHVNFSS GQRILPHFAE  240
IGEECIGGSS PEGNVNEARC MSRFTSDYWD DASLSGLKRK RDNDGSMFSG LNTLDNQDGN  300
SGNRVTGLTH HLSLPKTVSE MATIDKFLDF QGNSVPCKIR AKRGFATHPR SIAERVRRTR  360
ISERMRKLQE LFPDMDKQTN TADMLDLAVD HIKNLQKQVK VT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0027s0090.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314023.10.0transcription factor bHLH130 isoform X2
RefseqXP_024463708.10.0transcription factor bHLH130 isoform X1
RefseqXP_024463709.10.0transcription factor bHLH130 isoform X2
TrEMBLA0A3N7FJ220.0A0A3N7FJ22_POPTR; Uncharacterized protein
TrEMBLB9HNL60.0B9HNL6_POPTR; Uncharacterized protein
STRINGPOPTR_0009s06910.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.14e-62bHLH family protein