PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0026s0330.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | STAT | ||||||||
Protein Properties | Length: 653aa MW: 74078.3 Da PI: 6.0625 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 188.7 | 6.9e-59 | 219 | 336 | 1 | 118 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikf 87 ldvvllna+ q+++k++e+ asL+y d+gl+vek++d+e+pLL+s+dG+efs++drp kll+Gras+klkisqLsskc+nrLf+ik+ SapurV1A.0026s0330.2.p 219 LDVVLLNAMRQAIDKELEIFASLIYVDNGLPVEKTSDDEDPLLTSCDGIEFSNYDRPGKLLHGRASLKLKISQLSSKCENRLFCIKI 305 8************************************************************************************** PP STAT 88 eipklkkypfleavskpirCisrsrntrsss 118 eipk++ y+flea+s+pirCisrsrn r+s SapurV1A.0026s0330.2.p 306 EIPKFSGYHFLEAFSHPIRCISRSRNPRTSL 336 **************************99764 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.60.120.200 | 2.3E-5 | 17 | 142 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
Gene3D | G3DSA:3.30.505.10 | 5.6E-5 | 599 | 639 | IPR000980 | SH2 domain |
SuperFamily | SSF55550 | 7.47E-6 | 600 | 638 | IPR000980 | SH2 domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 653 aa Download sequence Send to blast |
MGSRINNNVI NIKDYILLKD FRMEIEVEKE KNLSLSFWVY LIDSDTTKFP ATIIKQVHLD 60 ITSSAPFIVL NEKMITLFPL LHENKETTNS SNSALMEIKF PLENWIHVGF EVLTDILRLH 120 INGDIVSEQP QSSSLDKNWN SNGPRKIALV GACADDGLQG YVYRAEVLPL SLSIKDHYVK 180 DPPLWLSIDL SSTSEIDEGN DGIWNIVGGK ASCRRVFSLD VVLLNAMRQA IDKELEIFAS 240 LIYVDNGLPV EKTSDDEDPL LTSCDGIEFS NYDRPGKLLH GRASLKLKIS QLSSKCENRL 300 FCIKIEIPKF SGYHFLEAFS HPIRCISRSR NPRTSLTWKR PTTVVEPFNK FQSFGLYNGS 360 IELQHNSIHE IRPSPSSKRI KLGQEKTSAM EKPNVECYSD TWTTNQVENT PRISLDMGVE 420 NVEEADNSSS VSDSIEGRLS NFKITSSSCY SISDVTIFKY CLGGLIDKAL LLKEVATSAA 480 EQELFRLANE VSLYSGCSHH RRQIVIAKRL IEEGTKIWNS ISQNNRLIQW EKVIFEIEEQ 540 FMRITCSSTR SLTEQDFELL RRIAGCREHM GQENFEKMWR WLYPVIFTLA SDPINTTWNS 600 TSPKWIEGFI TKEEAELSLQ GPRGLQEPGT FVLRFPTSRS WPHPDAVARK GG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0026s0330.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC208085 | 1e-96 | AC208085.1 Populus trichocarpa clone JGIACSB05-D05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024467295.1 | 0.0 | SH2 domain-containing protein A isoform X1 | ||||
Swissprot | Q56XZ1 | 0.0 | SHB_ARATH; SH2 domain-containing protein B | ||||
TrEMBL | A0A3N7HF65 | 0.0 | A0A3N7HF65_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s10360.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78540.1 | 0.0 | SH2 domain protein B |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0026s0330.2.p |
Publications ? help Back to Top | |||
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