PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0025s0830.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 185aa MW: 21658.8 Da PI: 8.8902 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.7 | 2e-25 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien++nrqvt+skRrn ++KKA+ L vLCd+ev+++++s t+k++ey+s SapurV1A.0025s0830.1.p 9 KKIENSTNRQVTYSKRRNDLFKKAHDLTVLCDTEVSLVMVSCTDKVHEYIS 59 68***********************************************86 PP | |||||||
2 | K-box | 83.7 | 3.9e-28 | 71 | 168 | 1 | 98 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 yq+++g +l++ ++e ++++l+kLk+ + +++re+R+++G++L++Ls+++Lq+Le+++e++ + i ++ n++l++qie+ +kk +++ SapurV1A.0025s0830.1.p 71 YQQTKGIDLWSCHYEIMKENLEKLKEMNIKIRREIRQRMGQCLNDLSFQDLQSLESDMESAWRVIHDRANRVLTNQIETFKKKVRNV 157 78999999******************************************************************************* PP K-box 88 qeenkaLrkkl 98 +++n++L++++ SapurV1A.0025s0830.1.p 158 EQINRKLKMEV 168 *******9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.777 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.3E-34 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.06E-35 | 2 | 80 | No hit | No description |
PRINTS | PR00404 | 1.9E-24 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.11E-34 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.1E-22 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-24 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-24 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.0E-19 | 83 | 167 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.622 | 84 | 174 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MARGKIQIKK IENSTNRQVT YSKRRNDLFK KAHDLTVLCD TEVSLVMVSC TDKVHEYISP 60 SITTKRIFDQ YQQTKGIDLW SCHYEIMKEN LEKLKEMNIK IRREIRQRMG QCLNDLSFQD 120 LQSLESDMES AWRVIHDRAN RVLTNQIETF KKKVRNVEQI NRKLKMEVGA MDEDPYGLVD 180 NGGD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0025s0830.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006386194.1 | 1e-121 | floral homeotic protein DEFICIENS | ||||
Swissprot | E0CPH4 | 5e-86 | AP3_VITVI; Agamous-like MADS-box protein AP3 | ||||
TrEMBL | U5GNN8 | 1e-119 | U5GNN8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s02990.1 | 1e-120 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2735 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 2e-70 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0025s0830.1.p |
Publications ? help Back to Top | |||
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