PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0025s0690.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 339aa MW: 37599.2 Da PI: 9.6631 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 378.8 | 9.1e-116 | 1 | 338 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye.........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalv 75 mdd g+re r k+ +y+ p++s+k q+m ++aerda+i ern+alsekkaa aerdmaflqrd+a+aern+al+ SapurV1A.0025s0690.3.p 1 MDDGGHREngRIKAdQYKtaqgqwlmqPQPSMK-----QIMNIMAERDAAILERNMALSEKKAANAERDMAFLQRDSAIAERNNALM 82 99***9999999999999766666554445555.....************************************************* PP GAGA_bind 76 erdnkllalllvensla....salpvgvqvlsgtksidslqqlse....pqledsavelreeeklealpieeaaeeakekkkkkkrq 154 erdn++++l+++ensl s++++g + ++g+k++++ qq+++ p++++ ++++re+++++a p + ++a+e++k+++++ SapurV1A.0025s0690.3.p 83 ERDNAIATLQYRENSLPggnlSNCAPGFHNSRGVKHTHQQQQQQHaqhlPHMNEGPYGAREMQTSDAVP---ESPVASEVAKPQRGK 166 **************988999999***************99998887889999********999998888...677888888887555 PP GAGA_bind 155 rakkpkekkakkkkkksekskkkvkkesader............................skaekksidlvlngvslDestlPvPvC 213 r+k++k++ +kk++ks +kvk+es+d++ sk+++k +dl+ln+v++De+t+P+PvC SapurV1A.0025s0690.3.p 167 RPKDAKATP---SNKKTSKSPRKVKRESEDTNmmfgkshewkneqdmdgggddlnkqlaaSKSDWKGQDLGLNQVAFDETTMPPPVC 250 555555555...5555556667777777775568889999*********************************************** PP GAGA_bind 214 sCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300 sCtG+ rqCYkWGnGGWqS+CCttt+S+yPLP+++++r+aR++grKmS++af+klL++LaaeG dlsnpvDLkdhWAkHGtn+++ti SapurV1A.0025s0690.3.p 251 SCTGVFRQCYKWGNGGWQSSCCTTTLSIYPLPAVPNKRHARVGGRKMSGSAFSKLLSRLAAEGQDLSNPVDLKDHWAKHGTNRYITI 337 *************************************************************************************** PP GAGA_bind 301 r 301 + SapurV1A.0025s0690.3.p 338 K 338 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 2.9E-104 | 1 | 338 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 7.8E-184 | 1 | 338 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MDDGGHRENG RIKADQYKTA QGQWLMQPQP SMKQIMNIMA ERDAAILERN MALSEKKAAN 60 AERDMAFLQR DSAIAERNNA LMERDNAIAT LQYRENSLPG GNLSNCAPGF HNSRGVKHTH 120 QQQQQQHAQH LPHMNEGPYG AREMQTSDAV PESPVASEVA KPQRGKRPKD AKATPSNKKT 180 SKSPRKVKRE SEDTNMMFGK SHEWKNEQDM DGGGDDLNKQ LAASKSDWKG QDLGLNQVAF 240 DETTMPPPVC SCTGVFRQCY KWGNGGWQSS CCTTTLSIYP LPAVPNKRHA RVGGRKMSGS 300 AFSKLLSRLA AEGQDLSNPV DLKDHWAKHG TNRYITIK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00540 | DAP | Transfer from AT5G42520 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0025s0690.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ982263 | 0.0 | FJ982263.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002301996.2 | 0.0 | protein BASIC PENTACYSTEINE6 | ||||
Refseq | XP_024451553.1 | 0.0 | protein BASIC PENTACYSTEINE6 | ||||
Swissprot | Q8L999 | 1e-155 | BPC6_ARATH; Protein BASIC PENTACYSTEINE6 | ||||
TrEMBL | B9GQZ0 | 0.0 | B9GQZ0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s02820.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42520.1 | 1e-157 | basic pentacysteine 6 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0025s0690.3.p |