PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0025s0690.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family BBR-BPC
Protein Properties Length: 339aa    MW: 37599.2 Da    PI: 9.6631
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0025s0690.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind378.89.1e-11613381301
               GAGA_bind   1 mdddgsre..rnkg.yye.........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalv 75 
                             mdd g+re  r k+ +y+         p++s+k     q+m ++aerda+i ern+alsekkaa aerdmaflqrd+a+aern+al+
  SapurV1A.0025s0690.1.p   1 MDDGGHREngRIKAdQYKtaqgqwlmqPQPSMK-----QIMNIMAERDAAILERNMALSEKKAANAERDMAFLQRDSAIAERNNALM 82 
                             99***9999999999999766666554445555.....************************************************* PP

               GAGA_bind  76 erdnkllalllvensla....salpvgvqvlsgtksidslqqlse....pqledsavelreeeklealpieeaaeeakekkkkkkrq 154
                             erdn++++l+++ensl     s++++g + ++g+k++++ qq+++    p++++ ++++re+++++a p   + ++a+e++k+++++
  SapurV1A.0025s0690.1.p  83 ERDNAIATLQYRENSLPggnlSNCAPGFHNSRGVKHTHQQQQQQHaqhlPHMNEGPYGAREMQTSDAVP---ESPVASEVAKPQRGK 166
                             **************988999999***************99998887889999********999998888...677888888887555 PP

               GAGA_bind 155 rakkpkekkakkkkkksekskkkvkkesader............................skaekksidlvlngvslDestlPvPvC 213
                             r+k++k++     +kk++ks +kvk+es+d++                            sk+++k +dl+ln+v++De+t+P+PvC
  SapurV1A.0025s0690.1.p 167 RPKDAKATP---SNKKTSKSPRKVKRESEDTNmmfgkshewkneqdmdgggddlnkqlaaSKSDWKGQDLGLNQVAFDETTMPPPVC 250
                             555555555...5555556667777777775568889999*********************************************** PP

               GAGA_bind 214 sCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300
                             sCtG+ rqCYkWGnGGWqS+CCttt+S+yPLP+++++r+aR++grKmS++af+klL++LaaeG dlsnpvDLkdhWAkHGtn+++ti
  SapurV1A.0025s0690.1.p 251 SCTGVFRQCYKWGNGGWQSSCCTTTLSIYPLPAVPNKRHARVGGRKMSGSAFSKLLSRLAAEGQDLSNPVDLKDHWAKHGTNRYITI 337
                             *************************************************************************************** PP

               GAGA_bind 301 r 301
                             +
  SapurV1A.0025s0690.1.p 338 K 338
                             8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062172.9E-1041338IPR010409GAGA-binding transcriptional activator
SMARTSM012267.8E-1841338IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDDGGHRENG RIKADQYKTA QGQWLMQPQP SMKQIMNIMA ERDAAILERN MALSEKKAAN  60
AERDMAFLQR DSAIAERNNA LMERDNAIAT LQYRENSLPG GNLSNCAPGF HNSRGVKHTH  120
QQQQQQHAQH LPHMNEGPYG AREMQTSDAV PESPVASEVA KPQRGKRPKD AKATPSNKKT  180
SKSPRKVKRE SEDTNMMFGK SHEWKNEQDM DGGGDDLNKQ LAASKSDWKG QDLGLNQVAF  240
DETTMPPPVC SCTGVFRQCY KWGNGGWQSS CCTTTLSIYP LPAVPNKRHA RVGGRKMSGS  300
AFSKLLSRLA AEGQDLSNPV DLKDHWAKHG TNRYITIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0025s0690.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9822630.0FJ982263.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301996.20.0protein BASIC PENTACYSTEINE6
RefseqXP_024451553.10.0protein BASIC PENTACYSTEINE6
SwissprotQ8L9991e-155BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLB9GQZ00.0B9GQZ0_POPTR; Uncharacterized protein
STRINGPOPTR_0002s02820.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69053449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-157basic pentacysteine 6