PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0025s0450.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 408aa    MW: 44298.3 Da    PI: 8.8955
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0025s0450.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012170192223
                             EETTTTEEESSHHHHHHHHHH.T CS
                 zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                              C+ Cg++F+  ++L+ H+++ H
  SapurV1A.0025s0450.1.p 170 ACTQCGEVFPKIESLELHQKVrH 192
                             6*******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280169192IPR007087Zinc finger, C2H2
PROSITE profilePS501579.432169197IPR007087Zinc finger, C2H2
SuperFamilySSF563992.21E-23194403No hitNo description
Gene3DG3DSA:3.90.228.101.3E-8196403IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MAALTFLQEH KETHQKQPSR RKRKLQKVRE KQPSSWDQIK NLLTCKQIEG SRVHDPSKSP  60
VGYSKLGSSC SSICSFKDVV HGNTRVVHRA DNSPESSALG QETGLLSRKG AGTGSSSARS  120
LTSSGRSNST GVTYTSSSRG MQFRKLSGCY ECHMIVDPGR CPSARTTVCA CTQCGEVFPK  180
IESLELHQKV RHAVSELGPE DSGRNIVEII FKSSWLIKKD NPICRIERIL KVHNTQRTIQ  240
RFEDCRDAVK TRALTSTRKN PRCAADGNEL LRFYCTTLTC SLGSLGSSSL CGSIPVCGVC  300
TIIRHGFQGI ECRGISTTAS SGRAHDSLWG CTDGRRAMLV CRVIAGRVKR VAEDAQPPEE  360
DGASAAVGSY DSVAGCGGIY SDLEDLSVFN PRAILPCFVV IYQALES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0025s0450.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2769650.0GU276965.1 Populus balsamifera isolate LOV02 haplotype B C2H2 type zinc finger family protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029003.10.0PREDICTED: uncharacterized protein LOC105128859
TrEMBLA0A2K2ALL90.0A0A2K2ALL9_POPTR; Uncharacterized protein
STRINGPOPTR_0005s25950.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103413037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-152C2H2-like zinc finger protein