PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0024s0520.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family TCP
Protein Properties Length: 344aa    MW: 36579.8 Da    PI: 9.3115
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0024s0520.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.93.1e-3777173289
                     TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssas.ns 85 
                             ++k+ +++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++  + ++ +  +  ns
  SapurV1A.0024s0520.1.p  77 PPKRASTKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsvN-GTLKIPTTaNS 162
                             789*************************************************************77777444321.11111111011 PP

                     TCP  86 ssg.......k 89 
                             ss+       k
  SapurV1A.0024s0520.1.p 163 SSElgeldatK 173
                             11122221111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.7E-3182173IPR005333Transcription factor, TCP
PROSITE profilePS5136927.18783137IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MASIQRQEED GDMRAVDLRI NSRELPNVRA SPTDKKNCND MSVALKEEPC TEERSPTPPL  60
GVMPLAAVPM PLTTVAPPKR ASTKDRHTKV EGRGRRIRMP AACAARIFQL TRELGHKSDG  120
ETIRWLLEHA EPAIIAATGT GTVPAIAMSV NGTLKIPTTA NSSSELGELD ATKKRKRPAN  180
SEYVDVNDTV SVSSSLALMT TQTPQPQQTV AAVPQSLVPM WAIPSNAVVP GAFFMVPSLA  240
GPSNQPQIFT FPAAATPLIN ISARPVSSFV SSMQSNIAVA MPVSGSTASG SMTAKGISMM  300
APSSSSACAL STSSTTTNRT PQMLRDFSLE IYDKQELQFM PRS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0024s0520.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450071.10.0transcription factor TCP9
SwissprotO646471e-102TCP9_ARATH; Transcription factor TCP9
TrEMBLB9GPT70.0B9GPT7_POPTR; Uncharacterized protein
STRINGPOPTR_0002s15360.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.12e-85TCP family protein