PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0024s0460.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARR-B
Protein Properties Length: 458aa    MW: 51370.1 Da    PI: 6.7987
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0024s0460.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like75.57.3e-24208261155
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             kp+l+Wt+eLH+rF+ea++ L G++ A Pk+il++m+v+gL  e+v SHLQkYRl
  SapurV1A.0024s0460.1.p 208 KPKLVWTNELHNRFLEAIRIL-GIDGAHPKKILQHMNVPGLKKENVSSHLQKYRL 261
                             79*******************.********************************8 PP
2Response_reg55.92.5e-19251301106
                             EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHH CS
            Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeed 85 
                             +l+v+ +p+ ++++ ++l+  gy ev++a+ +++al++l+ek+  ++lil+   +p+md +++l++ r  + +lpi+v++a ++ + 
  SapurV1A.0024s0460.1.p  25 ILVVESDPTCLRIVSKMLQAFGY-EVTTATRATDALHILREKEdeINLILTETHLPDMDQYKILETVRVMS-SLPIVVFSADNNVSA 109
                             89*********************.***************888778************************99.*************** PP

                             HHHHHHTTESEEEESS--HHH CS
            Response_reg  86 alealkaGakdflsKpfdpee 106
                             ++  l  Ga  +l+Kp+ +++
  SapurV1A.0024s0460.1.p 110 MIGWLYKGAALYLMKPIIKND 130
                             ****************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.3E-2621177No hitNo description
SuperFamilySSF521721.71E-2323143IPR011006CheY-like superfamily
SMARTSM004483.9E-1523135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011031.15124139IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-1425132IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.80E-1626126No hitNo description
SuperFamilySSF466891.08E-17206265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-25207265IPR009057Homeodomain-like
TIGRFAMsTIGR015577.6E-21208261IPR006447Myb domain, plants
PfamPF002493.1E-6211260IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MTSEQFLSVE VSKNNASTFA MSVRILVVES DPTCLRIVSK MLQAFGYEVT TATRATDALH  60
ILREKEDEIN LILTETHLPD MDQYKILETV RVMSSLPIVV FSADNNVSAM IGWLYKGAAL  120
YLMKPIIKND VKNLWQLACR KKKRTTVSSA GSNSFHAGFS EENASSVTAG MPSLSSTMGQ  180
SDQMGKRKEL EVTDKDDEDN DNLTVLKKPK LVWTNELHNR FLEAIRILGI DGAHPKKILQ  240
HMNVPGLKKE NVSSHLQKYR LSLKRKQDAT QKTMIRDRHP SMTLNLQGGF SQFTNPQFFK  300
TMSQSEYRNN VQNNLCSPVS MHSLGSVHSL TQVNSNHDSM LIPSYGQQSK QLYPTYPNCS  360
HTGIGTTDDG NFASFGQKGN HNVEEHLNQG TNFSNVGTHG PIFLGNSQQQ LQFPLLQPQP  420
LLEKEDEFDI TDIVTDARNE LLVMTKEFLD DPNNDLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-17204265162ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0024s0460.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834260.0AC183426.2 Populus trichocarpa clone Pop1-45L17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301318.30.0two-component response regulator ARR14 isoform X2
RefseqXP_024450142.10.0two-component response regulator ARR14 isoform X2
TrEMBLA0A3Q9EE420.0A0A3Q9EE42_POPTO; Response regulator 2,ARR-B
STRINGPOPTR_0002s15430.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145541114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-59response regulator 2