PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0024s0350.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 587aa    MW: 66180.1 Da    PI: 5.4461
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0024s0350.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.82.1e-19169154127
                     NAM  54 eekewyfFskrdkkyat.gkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                              ++ewyfF++rd ky++ +k  nr+tk+gyWk t k+k+++++ + +++g+ ktL+fy+  +pk ++t W++ e+ 
  SapurV1A.0024s0350.2.p  16 ADQEWYFFCRRDLKYRKtSKLCNRKTKAGYWKLTCKKKPIMAEhTMKNIGVMKTLTFYRTARPKDVRTGWMIYEFD 91 
                             678************963667899*****************9866778**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.8521112IPR003441NAC domain
SuperFamilySSF1019416.54E-2216111IPR003441NAC domain
PfamPF023652.3E-101891IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MDGFLFFADK SILNLADQEW YFFCRRDLKY RKTSKLCNRK TKAGYWKLTC KKKPIMAEHT  60
MKNIGVMKTL TFYRTARPKD VRTGWMIYEF DIVTNSSLSK KGQYVLCRLE NKTDERIKKG  120
EQNHLMAPVS VSEAVPGQSI MTSDFENQNS SEMVVDLACG DRGLSHHEGS DFGSQNSSEL  180
IPARQVNELS HAMASDFRNQ SSYKLRSNLA FDGSGSCHST DFNSETQYRN RPTVDSVFAS  240
KNHYLAFDSE NQNPNELLTV DSVYTVGENH YMDFDSEYQN PNELLTVDSV YTVSKNHYQN  300
PNELSAYTVS KNHYQNPNEL LTVDSAYTVS KHHYQNPNEL LTVDSAYTVS KNHCMAFDSE  360
YQKPNELLTF NSAYIVGKNH FDSHYPNPNA LLTADSAYDV SESQHMPFDS DNQILNNTKS  420
TSACENSLMA SHGFENTKLP FPPEGEYGTS LVIPCKFTNQ STYDKSEPSS LLASGFTNQN  480
LQKEINSSAF DEGEWSFLTA TTSDIRNQSP SRKADISTHE KGYSSYLTAP FSENNLADLA  540
LPEESLELLE SWKLFLSKNT ALTQHFSPVC VEGSHSCMDY STSACT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-121811569171Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0024s0350.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826730.0AC182673.2 Populus trichocarpa clone Pop1-26A1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024449898.10.0uncharacterized protein LOC7494041 isoform X2
TrEMBLA0A2K2BJ960.0A0A2K2BJ96_POPTR; Uncharacterized protein
STRINGPOPTR_0002s15550.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.33e-20NAC transcription factor-like 9