PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0023s0580.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | AP2 | ||||||||
Protein Properties | Length: 487aa MW: 52819.3 Da PI: 8.3426 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.1 | 1e-13 | 165 | 215 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfsl.gkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++l g f+ta Aa+a+++a+ k++g SapurV1A.0023s0580.1.p 165 SQYRGVTFYRRTGRWESHIWD------CgKQVYLaGGFDTAHAAARAYDRAAIKFRG 215 78*******************......5588887699*****************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.77E-10 | 165 | 225 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-14 | 165 | 224 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.4E-6 | 165 | 215 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.5E-15 | 166 | 224 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.62 | 166 | 223 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-29 | 166 | 229 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-6 | 258 | 302 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.15E-13 | 258 | 303 | No hit | No description |
SMART | SM00380 | 1.1E-11 | 259 | 307 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence Send to blast |
MLDLNLGITS SDSCCDDNNK SNMMVIVDSG YHQEKEAASR NQQMEDSATS NSSITNTTED 60 ENSSNISNSA FIFDILKKDG NFTNTGTIIA TKETNPNCDF TTQQLFPGST GLGLNFQPGL 120 AVTSGTRPQW LKLSQMGSSP EAELNVQQKQ QQTRKSRRGP RSKSSQYRGV TFYRRTGRWE 180 SHIWDCGKQV YLAGGFDTAH AAARAYDRAA IKFRGVDADI NFNLSDYEED MKQMKNLSKE 240 EFVHILRRQS NGFSRGSSKY RGVTLHKCGR WEARTGQSAG NKAYDKAALK FNGTEAVTNF 300 EPSVYEGDMI SYPNNGGSGH SLDLSLGISR PSNDPKGSDN VGDLHCRYGG SEIPSKERQV 360 VEGAAAAHMG LQTLHGSPVA ARNLPAWSGI YPGLLPSYEE RATEKRVAAV SSPIFSSWPW 420 QINGGNSVVA TMSQLSVAAS SGFSASTVTA SSATLPFNHQ NHFAGNLRLS APTPSATNPS 480 LYSYKS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0023s0580.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024466943.1 | 0.0 | ethylene-responsive transcription factor RAP2-7 isoform X3 | ||||
Swissprot | Q9SK03 | 3e-87 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | A0A2K1YY45 | 0.0 | A0A2K1YY45_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s22320.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2807 | 34 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.1 | 9e-76 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0023s0580.1.p |