PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0023s0430.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | LBD | ||||||||
Protein Properties | Length: 218aa MW: 23718.9 Da PI: 6.4881 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 138 | 3.2e-43 | 66 | 165 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i++lq+q+ SapurV1A.0023s0430.1.p 66 PCAACKILRRRCVDKCVLAPYFPPSEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAISQLQKQV 152 7************************************************************************************** PP DUF260 88 eqlkaelallkee 100 + l+a+la++++e SapurV1A.0023s0430.1.p 153 SDLQAQLAKAQAE 165 ********99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.058 | 65 | 166 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.5E-43 | 66 | 163 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MDMIEQSAAK SPINAPSQFP YSPSSSSPSY SHHYSPTAYS SPSKSSPNLT PPSAATPPPP 60 PVVVSPCAAC KILRRRCVDK CVLAPYFPPS EPYKFTIAHR VFGASNIIKF LQELPESQRA 120 DAVSSMVYEA NARIRDPVYG CAGAISQLQK QVSDLQAQLA KAQAEVVNMQ CQQANLVALL 180 CMEMTQSQQE PILQQHVDTS CFLDENNLGT SWEPLWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-44 | 58 | 173 | 3 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-44 | 58 | 173 | 3 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0023s0430.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ284165 | 0.0 | HQ284165.1 Populus tremula x Populus alba lateral organ boundaries domain 1 (LBD1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011027000.1 | 1e-127 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 3e-73 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | E7DP38 | 1e-123 | E7DP38_POPCN; Lateral organ boundaries domain 1 | ||||
STRING | POPTR_0008s04350.1 | 1e-123 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 5e-68 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0023s0430.1.p |