PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0020s0460.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | STAT | ||||||||
Protein Properties | Length: 708aa MW: 79786.1 Da PI: 5.3712 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 197.7 | 1.1e-61 | 222 | 340 | 1 | 119 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikf 87 ldvvllna+ q+v+k++e+vasL+yadsgl+vek++d+e+pLL+s+dG+ef+s+drp kll+Gras+klkisqLsskcdnrLfrik+ SapurV1A.0020s0460.2.p 222 LDVVLLNAICQAVNKELEIVASLVYADSGLHVEKTSDDEDPLLASCDGIEFASYDRPGKLLHGRASLKLKISQLSSKCDNRLFRIKL 308 8************************************************************************************** PP STAT 88 eipklkkypfleavskpirCisrsrntrsssl 119 eipk++ y+flea+s+pirCisr rn r+s + SapurV1A.0020s0460.2.p 309 EIPKFSGYHFLEAFSHPIRCISRCRNPRTSMT 340 **************************997654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.60.120.200 | 1.4E-6 | 13 | 152 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
SuperFamily | SSF49899 | 3.17E-6 | 16 | 165 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
Pfam | PF13385 | 1.6E-6 | 16 | 165 | No hit | No description |
Gene3D | G3DSA:3.30.505.10 | 1.9E-6 | 601 | 687 | IPR000980 | SH2 domain |
SuperFamily | SSF55550 | 3.21E-8 | 602 | 677 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 9.693 | 608 | 707 | IPR000980 | SH2 domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 708 aa Download sequence Send to blast |
MGSDDNNNNN VINRKDYILL KDFRKEIEVE NEKNFSISFW VYLINSSTAA FPATIIKQVC 60 SDISSNAPFL VLNEKKKMTL FPFLHAHKDT TNFSNSTSME IEFPLENWIH VGCEVVTDML 120 RLHINGEIVG EQPQSFSLDK SLNSNGLRKI TLAGAGVDDG LQGYIHLAEV LPLSFSIKDH 180 YVKDPPLRLS VDLSSTSEID EDSDSIWNIV GGKASCRRIF SLDVVLLNAI CQAVNKELEI 240 VASLVYADSG LHVEKTSDDE DPLLASCDGI EFASYDRPGK LLHGRASLKL KISQLSSKCD 300 NRLFRIKLEI PKFSGYHFLE AFSHPIRCIS RCRNPRTSMT WKRPSSAPDP SNKSQSFGLC 360 NGSLELQHNS IHEIRAGPSS KRIKLGKERT STLGQTDVAC YSDTRTTNQV ANAVETQLAR 420 EAENIEEADN SPSVSDSIEE RLSDFNIMSS SGYLISDVII FKYCLGGMTD RALLLKEVAT 480 SASEEDLFRL ANEVSLYSGC SHHRRQIVIA KRLIEEGTKV WNSISQNNRL IQWENGVFEI 540 EEQFMRITCS STRSFTEQDF ELLRRISGCG EYMAQENFEK IWRWLYPVAF TLTSDSINTI 600 WNSTSPKWIE GFITKEEAEL SLQGPRGLQE PGTFVLRFPT SRSWPHSDAG CLIVTYVGSD 660 YTIHHRLLSL DYIYSCEESE MNGKSLEDML FAEPELSRLG RIVRQRQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0020s0460.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC208085 | 1e-176 | AC208085.1 Populus trichocarpa clone JGIACSB05-D05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011045568.1 | 0.0 | PREDICTED: uncharacterized protein LOC105140432 isoform X1 | ||||
Refseq | XP_011045569.1 | 0.0 | PREDICTED: uncharacterized protein LOC105140432 isoform X2 | ||||
Swissprot | Q56XZ1 | 0.0 | SHB_ARATH; SH2 domain-containing protein B | ||||
TrEMBL | A0A2K2CAA6 | 0.0 | A0A2K2CAA6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s10360.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78540.1 | 0.0 | SH2 domain protein B |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0020s0460.2.p |
Publications ? help Back to Top | |||
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