PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0019s0910.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 337aa    MW: 37686.2 Da    PI: 8.0412
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0019s0910.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.3e-12158205355
                             HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  SapurV1A.0019s0910.2.p 158 QDHIIAERKRREKLSQRFIALSAVVPGL-----KKMDKASVLGDAIKYLKQLQ 205
                             6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.91155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-10158205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.04E-17159221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-17159217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.15E-12160209No hitNo description
SMARTSM003531.0E-14161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
METSSITALC ELGMEDPSFI NQWYMNSLDD ISLLPLAAAF GENAHHPFSH QNFNLKTSMD  60
AAPTSINVRP TKQMKTYHLS DPQSAFSPNI LSFVNPNHAN QMGLVKPKEE AVRSKSINNL  120
PSDMVVSQDI FGNQNYVFKA CQGPERISTN STRLSQSQDH IIAERKRREK LSQRFIALSA  180
VVPGLKKMDK ASVLGDAIKY LKQLQEKVKT LEEQTRRKTM ESVVIVKKSH IYVDEGDGNS  240
SSDESKGPIH ETLPEIEARF CDKHVLIRIH CEKRKGVLEK TVAEIEKLHL SVINSSVLAF  300
GTSALHVTII AQMDIDFGMS VKDLVKNLRS TFEIFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-14159208857Transcription factor MYC2
5gnj_B1e-14159208857Transcription factor MYC2
5gnj_E1e-14159208857Transcription factor MYC2
5gnj_F1e-14159208857Transcription factor MYC2
5gnj_G1e-14159208857Transcription factor MYC2
5gnj_I1e-14159208857Transcription factor MYC2
5gnj_M1e-14159208857Transcription factor MYC2
5gnj_N1e-14159208857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163168ERKRRE
2164169RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0019s0910.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002806.10.0PREDICTED: transcription factor bHLH18-like isoform X1
TrEMBLB9HN590.0B9HN59_POPTR; Uncharacterized protein
STRINGPOPTR_0009s08500.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-64bHLH family protein