PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0019s0420.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Nin-like

Protein Properties

Length: 525aa MW: 59052 Da PI: 4.9831

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0019s0420.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.3	3.7e-29	203	253	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l+kyF++++kdAAk++gvc+T+LKr CRqyGI+RWP+Rkik++ SapurV1A.0019s0420.1.p 203 EKTISLQVLRKYFAGSLKDAAKSIGVCPTTLKRMCRQYGINRWPSRKIKKV 253 79***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.018	192	273	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-23	205	253	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.41E-22	410	506	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.6E-20	419	500	No hit	No description
SMART	SM00666	1.7E-21	420	503	IPR000270	PB1 domain
PROSITE profile	PS51745	19.425	420	503	IPR000270	PB1 domain
CDD	cd06407	3.75E-35	421	501	No hit	No description
Pfam	PF00564	1.0E-13	421	501	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence Send to blast
MDHGGFMTNP IFRTTSDTFM DLNLIDELLV QGYWWESADG VNFLESEPSI SNVLCDPSQY 60 VPFMGSGHLS INSHHLTCQV ETDISLENPP VVYPETEDHG VETITSPVHS EGSQFESVEF 120 VPEFCESWEC LKQEPEEEET LQETTDSDNN DLDLYQEQEF SDFGKLQQNP ERCTVESGRD 180 SIVPWSHLLG SRKTGKKRQT KTEKTISLQV LRKYFAGSLK DAAKSIGVCP TTLKRMCRQY 240 GINRWPSRKI KKVNHSLKKL QLVVDSVMGA QGLIEMDSFY STFPELSSPG YFEQNPFSPF 300 KITDYPKESN PKPINHLFSP EGPVSKSQSS SNSQNSGVFI CNGRRQLTST VKGLSTGQDL 360 AVEDPVEVMK RACNKSELHA LNKEELDRAK SNETSGQHQN LETLASLPIS NSQCLRDGGS 420 FRIKATFGDE NIRFSLQPNW GFRDLQREIA KRFDIDDFSR IGLKYLDNDH ESILLTCDAD 480 LAECKDLLGF SQSRTIKITL HLVTKPHLGS SFSSRDLFQC TASF*

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence Send to blast

MDHGGFMTNP IFRTTSDTFM DLNLIDELLV QGYWWESADG VNFLESEPSI SNVLCDPSQY  60
VPFMGSGHLS INSHHLTCQV ETDISLENPP VVYPETEDHG VETITSPVHS EGSQFESVEF  120
VPEFCESWEC LKQEPEEEET LQETTDSDNN DLDLYQEQEF SDFGKLQQNP ERCTVESGRD  180
SIVPWSHLLG SRKTGKKRQT KTEKTISLQV LRKYFAGSLK DAAKSIGVCP TTLKRMCRQY  240
GINRWPSRKI KKVNHSLKKL QLVVDSVMGA QGLIEMDSFY STFPELSSPG YFEQNPFSPF  300
KITDYPKESN PKPINHLFSP EGPVSKSQSS SNSQNSGVFI CNGRRQLTST VKGLSTGQDL  360
AVEDPVEVMK RACNKSELHA LNKEELDRAK SNETSGQHQN LETLASLPIS NSQCLRDGGS  420
FRIKATFGDE NIRFSLQPNW GFRDLQREIA KRFDIDDFSR IGLKYLDNDH ESILLTCDAD  480
LAECKDLLGF SQSRTIKITL HLVTKPHLGS SFSSRDLFQC TASF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0019s0420.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024463895.1	0.0	protein NLP2
Refseq	XP_024463896.1	0.0	protein NLP2
TrEMBL	A0A3N7FP05	0.0	A0A3N7FP05_POPTR; Uncharacterized protein
STRING	POPTR_0009s09060.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF28204	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	4e-93	Nin-like family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0019s0420.1.p