PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0019s0260.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | LBD | ||||||||
Protein Properties | Length: 189aa MW: 20717.6 Da PI: 8.3366 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 88.4 | 9e-28 | 2 | 102 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 +C++C+vlr++C+++C+l+ ++ p++q++++ +v+k+FG+ ++++++++p+++ + +++sl++eA r+ +Pv+Gavg++++ SapurV1A.0019s0260.1.p 2 SCNGCRVLRKGCSEECALRHCIewidnPQAQANATVFVAKFFGRGGLMSFISSVPKSQGPSLFRSLLFEAVGRTVNPVSGAVGLLWT 88 6************************************************************************************** PP DUF260 83 lqqqleqlkaelal 96 ++++++q+++ ++l SapurV1A.0019s0260.1.p 89 GNWHVCQKAVMTVL 102 *******9987665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.662 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-23 | 2 | 98 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MSCNGCRVLR KGCSEECALR HCIEWIDNPQ AQANATVFVA KFFGRGGLMS FISSVPKSQG 60 PSLFRSLLFE AVGRTVNPVS GAVGLLWTGN WHVCQKAVMT VLRRGTVEPR PEFDNASECG 120 SFRPPVDHVS SRPQPLKRKR ADLDLCFTYQ RADTPPEESE TTTLESGSGN NCRFHDGGGE 180 PKLLRLFV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0019s0260.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002313905.1 | 1e-112 | LOB domain-containing protein 39 isoform X1 | ||||
Swissprot | Q9SN23 | 9e-60 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | B9HMY4 | 1e-110 | B9HMY4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s09270.1 | 1e-111 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 7e-62 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0019s0260.1.p |