PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0019s0030.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | HB-PHD | ||||||||
Protein Properties | Length: 909aa MW: 99947.9 Da PI: 4.6217 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 35.5 | 1.7e-11 | 828 | 870 | 10 | 52 |
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 +++L ++F++n+yp++++++ LA++lg+ +qV WF N R SapurV1A.0019s0030.1.p 828 AVTQRLYSYFKENQYPDRAAKASLAEELGIMSEQVNRWFVNAR 870 56899************************************99 PP | |||||||
2 | PHD | 39 | 1.8e-13 | 464 | 519 | 1 | 51 |
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ +++++++lCdg C++ fH+ Cl ++l +e++p g wlC+ C++k SapurV1A.0019s0030.1.p 464 FCAKCGSkdLNADNDIILCDGaCDRGFHQFCLIPPLLREDIPPGdeGWLCPGCDCK 519 699***987778********66********************9999*******985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 1.02E-13 | 454 | 522 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 8.9E-13 | 460 | 519 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.95 | 462 | 519 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 1.4E-9 | 464 | 517 | IPR001965 | Zinc finger, PHD-type |
CDD | cd15504 | 2.34E-27 | 464 | 516 | No hit | No description |
Pfam | PF00628 | 4.6E-11 | 464 | 519 | IPR019787 | Zinc finger, PHD-finger |
PROSITE pattern | PS01359 | 0 | 465 | 516 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:1.10.10.60 | 3.9E-11 | 796 | 871 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.7E-8 | 818 | 880 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.33E-10 | 825 | 876 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.5E-9 | 828 | 871 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.09E-9 | 830 | 870 | No hit | No description |
PROSITE profile | PS50071 | 11.985 | 833 | 876 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 909 aa Download sequence Send to blast |
MSEAENMGVS PSQVSSHTKS YSCPAQTKLE NTHEFTAEYN CGEYSEENPK FESEIIQTEA 60 TNNGATVLQS GARETVERST EDVTNNSLTD LDPPPEGARG APFDEISRPI LTAIDQKLEP 120 GDTHCESSKP IDSGTLQEPI NTNAAPSSCI ASETSQISLE DLASNSCAED VGLPHGDANK 180 GNQIDKSSYP QQTRSAHALE LLSNGACHEP SEERQKPGSE LSENESMGIG TELHSGTAIK 240 NSELLTQLVT KSSPVKHVGL LPGDNIIIPA NEQTRPNHDD EDKGPDHEHL ETPSRVVIIA 300 RRGRPRGKSA SKLSRKKYML RSLRSSDRVL RSRSQGNPKA PESSNNLGNV NSIGDKKGKR 360 RKKRRGKNIV ADEYSKIKAH LRYLLNRMSY EQSLITAYSG EGWKGLSLEK LKPEKELQRA 420 TSEIIRRKVK IRDLFQHIDL LCSEGRFPAS LFDSEGQIDS EDIFCAKCGS KDLNADNDII 480 LCDGACDRGF HQFCLIPPLL REDIPPGDEG WLCPGCDCKV DCIDLLNDSQ GTNISISDCW 540 EKVFPEAAAA ASGQKLDHNF GPSSDDSDDN DYNPDGPDID KKSQEEESSS DESDFTSASE 600 EFKPPPDGKE YMGLSSDDSE DDEYDPDAPV LEEKLKQESS SSDFTSDSED LAAIINSDGL 660 SLEDECHMPT EARGVSNGRK FKSNGKKMQS LNSEILSMLE PDLCRDESAT VSGKRNVDRL 720 DYKKLYDETY GNISTSSDDD YSDTVAPSKR RKNNGDVVTV TANGDASVTE NMNQELKENK 780 HNPDRGTCQN SIFQATNSSP AKTYVGASLS GSSGKSVRSS TYKKLGEAVT QRLYSYFKEN 840 QYPDRAAKAS LAEELGIMSE QVNRWFVNAR WSFNRSSSTG LFAKKEICWL GNQFYSMLLV 900 DELTIYLL* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 303 | 316 | RPRGKSASKLSRKK |
2 | 355 | 363 | KKGKRRKKR |
3 | 358 | 364 | KRRKKRR |
4 | 360 | 367 | RKKRRGKN |
5 | 361 | 366 | KKRRGK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds only to large DNA fragments. Recognizes a DNA fragment carrying 8 copies of box7 motif of the light-induced cab-E promoter of Nicotiana plumbaginifolia. Also recognizes the box7m1 motif. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0019s0030.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CU233771 | 0.0 | CU233771.1 Populus EST from severe drought-stressed opposite wood. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024464583.1 | 0.0 | homeobox protein HAT3.1 | ||||
Refseq | XP_024464584.1 | 0.0 | homeobox protein HAT3.1 | ||||
Refseq | XP_024464585.1 | 0.0 | homeobox protein HAT3.1 | ||||
Swissprot | Q04996 | 1e-137 | HAT31_ARATH; Homeobox protein HAT3.1 | ||||
TrEMBL | A0A2K1Z5B7 | 0.0 | A0A2K1Z5B7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s09600.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8437 | 31 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19510.1 | 6e-89 | Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0019s0030.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|